drshailesh88/integrated_content_os
176 skills5.1k installs880 starsGitHub
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npx skills add https://github.com/drshailesh88/integrated_content_osSkills in this repo
1Social Media Trends Researchsocial-media-trends-research is a Claude skill built around a SimpleRedditScraper Python class that queries Reddit's public `.json` API endpoints without API keys or authentication. It uses requests with a browser User-Agent header, rate-limited GET calls to reddit.com URLs, and structured parsing of search results to surface trending discussions and pain points. Developers reach for social-media-trends-research during early research when deciding blog topics, developer marketing angles, or feature hypotheses grounded in community chatter. The skill suits quick trend reconnaissance from coding agents rather than enterprise social listening platforms. It requires network access and respectful rate limiting when hitting Reddit's public endpoints.632installs2Medical Newsletter WriterRuns a five-phase workflow that extracts topics from a PDF, predicts engagement, researches PubMed, and drafts a ~3,000-word cited newsletter in Topol's voice. A developer uses it to produce publication-ready medical newsletters with 20-30 citations.68installs3Academic Chapter WriterThis skill runs an agentic workflow to produce publishable academic textbook chapters, researching via PubMed, generating an approved table of contents, then writing cited sections. Authors use it to create long-form, well-referenced medical or scientific chapters.55installs4Youtube Script MasterCreates data-driven, evidence-based cardiology YouTube scripts in Hinglish by consuming a research pipeline and RAG/PubMed knowledge. A creator uses it to write full 15-30 minute video scripts with structured hooks, body, and CTAs.49installs5Influencer AnalyzerFinds and scrapes content from tracked cardiology influencers, then analyzes topics, formats, and engagement to produce a gap analysis. A developer uses it when planning a content strategy and wanting to see what competitors post and where to differentiate.47installs6Viral Content PredictorAnalyzes content ideas from PDF/DOCX files and predicts viral potential (views, engagement, retention) for a medical-education channel. A creator uses it to prioritize which video ideas to produce and how to structure them.47installs7Quick Topic ResearcherQuick Topic Researcher generates a fast, focused research brief before recording a video or writing content. A developer uses it to gain rapid topic mastery via parallel PubMed and web search in minutes.44installs8Browser AutomationThis skill uses Playwright MCP to automate the ChatGPT Plus and Gemini Advanced web interfaces, letting you send prompts and capture responses through existing subscriptions instead of paid APIs. Users invoke it to run both models for writing comparison without API costs.41installs9Cardiology Visual SystemThis meta-skill routes cardiology visual-content requests to the optimal tool, from Fal.ai imagery and Gemini infographics to Mermaid diagrams, Marp slides, and Plotly charts. Cardiology content creators use it to handle all visual needs within Claude Code.40installs10Authentic VoiceThis skill transforms AI-sounding writing into natural human prose by removing telltale patterns such as importance-puffing, ghost language, and negative parallelism. Writers and editors use it on articles, emails, posts, and marketing copy to make text sound authentically human.39installs11Content Seo OptimizerA three-agent SEO pipeline that scrapes content, analyzes SERP competitors, and produces a prioritized optimization report. A developer uses it before and after publishing to diagnose low traffic and maximize discoverability.38installs12Deep ResearcherA research methodology skill that performs multi-layered investigation with file-based tracking, parallel threads, and context-efficient patterns. A developer uses it for deep research requiring five or more sources, with medical citations restricted to PubMed.38installs13Infographic GeneratorRenders infographic images from structured JSON across six templates using a Python CLI script. A developer uses it to produce branded medical infographics for social posting after preparing the copy.38installs14Carousel GeneratorThis skill generates branded 1080x1080px Instagram carousel slides from text or markdown, applying set brand colors, typography, and a consistent footer. Content creators use it to produce ready-to-post carousels for specific Instagram accounts.36installs15Content Marketing Social ListeningA content marketing toolkit for social listening, trend discovery, and content-demand assessment across platforms. A developer uses it to research trending topics, find viral content, and plan data-driven content calendars.36installs16Twitter Longform MedicalTwitter Long-Form Medical writes evidence-first long-form Twitter content on medicine and cardiology for educated non-specialists. A developer uses it to build thought-leadership posts backed by data, charts, and Q1 citations.34installs17Venue TemplatesVenue Templates provides LaTeX templates, formatting requirements, and submission guidelines for scientific publication venues. A developer uses it to prepare manuscripts, conference papers, posters, and grant proposals to spec.32installs18Cardiology Science For PeopleThis skill writes accurate cardiology science for lay audiences, translating trials and research into plain-English stories an 8th grader can follow without oversimplifying. Cardiologists use it to create public-facing content that stays scientifically correct with PubMed verification.31installs19Market Research Reportsmarket-research-reports is a Claude Code skill for ai & agent building. It helps solo builders move faster with AI-assisted development.31installs20Cardiology Youtube ScriptwriterThis skill covers the complete cardiology YouTube content workflow: discovery, social-listening research, idea generation, approval, and full script writing. Cardiology creators use it to go from topic idea to finished, engaging video script.30installs21Content OsA content orchestrator that coordinates research, writing, quality review, and visual generation skills to produce all content types from a seed idea or split long-form into short-form. A developer uses it to run a full multi-format content pipeline with quality gates.30installs22Video Delivery CoachAnalyzes your own video recordings before publishing, measuring vocal pace/pitch, facial expression, eye contact, and filler words. A creator uses it to score and improve on-camera delivery across successive videos.30installs23Cardiology Topol WriterThis skill transforms unstructured cardiology thought dumps into polished articles, newsletters, and video scripts in Eric Topol's evidence-based voice with Peter Attia's rigor. Cardiologists use it to convert raw clinical thinking into authoritative content.29installs24Scientific Visualizationscientific-visualization is a Claude Code skill for ai & agent building. It helps solo builders move faster with AI-assisted development.29installs25Generate Imagegenerate-image is a Claude Code skill for ai & agent building. It helps solo builders move faster with AI-assisted development.28installs26Pubmed Databasepubmed-database is a Claude Code skill for databases. It helps solo builders move faster with AI-assisted development.28installs27Treatment PlansTreatment Plans generates focused clinical care documents in LaTeX/PDF across medical specialties. A developer uses it to produce concise, HIPAA-compliant plans with measurable goals and evidence-based interventions.28installs28Cardiology EditorialThis skill discovers and scores recent landmark trials from top cardiology journals, then writes cited 500-word editorials in Eric Topol's Ground Truths style. Interventional cardiologists use it to build thought-leadership newsletter content for peers.27installs29Parallel Literature SearchRuns literature searches across PubMed, Perplexity, and an AstraDB RAG knowledge base in parallel and merges results into a single coherent summary. A developer uses it for fast evidence gathering on clinical questions in 30-60 seconds.27installs30Scientific SchematicsScientific Schematics creates publication-quality diagrams from text descriptions using Nano Banana Pro AI. A developer uses it for neural network architectures, system diagrams, flowcharts, and biological pathways with iterative quality checks.27installs31Chembl DatabaseThis skill queries ChEMBL, a curated database of over 2 million bioactive molecules, using the Python client to search compounds, targets, and bioactivity data. Medicinal chemists use it to find inhibitors, run SAR studies, and analyze drug-likeness.26installs32Citation Managementcitation-management is a Claude Code skill for ai & agent building. It helps solo builders move faster with AI-assisted development.26installs33Content ReflectionA pre-publication review system that critiques drafted content across scientific rigor, voice authenticity, positioning, and credibility risk. A developer uses it after drafting tweets, newsletters, or scripts to get structured critique and revision suggestions.26installs34Content Research Writercontent-research-writer is a Claude Code skill for marketing & seo. It helps solo builders move faster with AI-assisted development.26installs35Content Trend ResearcherA content research skill that analyzes trends across 10+ platforms to identify trending topics, content gaps, and user intent. A developer uses it to generate data-driven article outlines optimized for engagement.26installs36Ensemble Content ScorerA multi-model consensus scorer that rates the same content idea across several LLMs in parallel and aggregates the results. A developer uses it to reduce single-model bias and improve viral-potential predictions for content ideas.26installs37Gemini ImagegenA skill for generating and editing images using Google's Gemini API (Nano Banana Pro). A developer uses it for text-to-image, image editing, multi-turn refinement, and composition from multiple reference images.26installs38Hypothesis GenerationA skill for systematic scientific hypothesis generation across domains. A developer uses it to formulate evidence-based hypotheses from observations, design experiments, explore competing explanations, and develop predictions.26installs39Markitdownmarkitdown is a Claude Code skill for ai & agent building. It helps solo builders move faster with AI-assisted development.26installs40Paper 2 WebPaper2All transforms research papers into three promotional formats: explorable homepages, narrated presentation videos, and posters using LLM-powered extraction and refinement. A developer uses it to disseminate research and prepare conference materials.26installs41Scientific Slidesscientific-slides is a Claude Code skill for ai & agent building. It helps solo builders move faster with AI-assisted development.26installs42Article ExtractorThis skill extracts the main readable content from web articles and blog posts, removing navigation, ads, and signup prompts, then saves clean text. Users invoke it to download or save an article from a URL without distractions.25installs43Cardiology Trial EditorialThis skill identifies recent important cardiology trials via PubMed, scores their importance systematically, and writes 500-word editorials in Eric Topol's Ground Truths style. Cardiologists use it to produce thought-leadership content demonstrating domain expertise.25installs44Clinical Decision SupportThis skill produces professional clinical decision support documents, including patient cohort analyses and treatment recommendation reports with GRADE grading and statistical analysis. Clinical and pharma researchers use it to output publication-ready LaTeX/PDF for drug development and evidence synthesis.25installs45Kegg DatabaseWraps the KEGG REST API with Python helpers for querying pathways, genes, compounds, enzymes, diseases, and drugs across organisms. A bioinformatics developer uses it for direct HTTP/REST pathway work or KEGG-specific control.25installs46Latex PostersGuides creation of publication-quality academic posters using LaTeX poster packages with proper typography, color, and visual hierarchy. A developer uses it to build conference or thesis posters, including size-compliant A0/A1 layouts and integrated figures.25installs47Multi Model WriterProvides a unified writing system that routes tasks to different LLMs based on task complexity and cost, defaulting to Claude. A developer uses it to draft in bulk cheaply, escalate to higher-quality models, or reach web chat interfaces via browser automation.25installs48Opentrons IntegrationOpentrons is a Python lab-automation platform for Flex and OT-2 robots, programmed through Protocol API v2. A developer uses it to automate liquid handling, control modules like thermocyclers, and simulate protocols before robot execution.25installs49PufferlibPufferLib is a high-performance RL library achieving millions of steps per second through optimized vectorization and native multi-agent support. A developer uses it to train PPO agents, build custom environments, and integrate existing RL suites.25installs50RdkitRDKit is a cheminformatics library for fine-grained molecular analysis and manipulation in Python. A developer uses it for descriptors, fingerprints, substructure search, and reactions in drug discovery and computational chemistry.25installs51Research GrantsResearch Grant Writing structures competitive federal funding proposals across agency requirements. A developer uses it to draft specific aims, broader impacts, budgets, and compliance-ready narratives.25installs52Scikit Bioscikit-bio is a Python library for working with biological data across sequences, phylogenetics, and microbial ecology. A developer uses it for alignments, diversity metrics (alpha/beta, UniFrac), ordination, and PERMANOVA.25installs53Stable Baselines3Stable Baselines3 is a PyTorch library of reliable reinforcement learning algorithm implementations. A developer uses it to train RL agents, build custom environments, and add callbacks for monitoring and control.25installs54Statistical Analysisstatistical-analysis is a Claude Code skill for ai & agent building. It helps solo builders move faster with AI-assisted development.25installs55Uspto DatabaseUSPTO Database provides API access to patent and trademark data for IP analysis and prior-art searches. A developer uses it to search patents/trademarks, retrieve examination history, and track assignments and citations.25installs56X Post Creator SkillGenerates batches of cardiology-focused X (Twitter) posts combining seed ideas, modifiers, audience profiles, and copywriting frameworks. A cardiologist uses it to produce scientifically accurate social posts at scale.25installs57Zinc DatabaseProvides programmatic access to the ZINC database of purchasable chemical compounds for drug discovery. A researcher uses it to search by ID/SMILES, run similarity searches, and pull 3D structures for docking.25installs58AstropyAstropy is the core Python library for astronomy, providing coordinate transformations, physical units, FITS file handling, cosmological calculations, and time-scale conversions. Astronomers and researchers use it for astronomical data analysis and processing.24installs59BioservicesBioServices is a Python package providing unified programmatic access to about 40 bioinformatics web services and databases over REST and SOAP. Developers use it for multi-database workflows: protein queries, pathway analysis, compound searches, and cross-database identifier mapping.24installs60Cardiology Content RepurposerThis skill repurposes long-form cardiology material (transcripts, newsletters, PDFs) into multiple thought-leadership formats using a 4A framework and patient archetypes. Cardiologists use it to turn source content into patient-facing posts, essays, tweets, and blogs with clinical authority.24installs61Cardiology Newsletter WriterThis skill runs topic discovery and trend analysis across cardiology journals, scores engagement potential, then writes referenced thought-leadership newsletters in Eric Topol's style. Interventional cardiologists use it for the full workflow from trend analysis to final newsletter draft.24installs62Cardiology Tweet WriterThis skill produces batches of 10 evidence-based cardiology tweets by permuting topic seeds and audience modifiers, verifying scientific accuracy, and applying strict writing rules. Cardiologists use it to build social-media thought leadership targeting patients and caregivers.24installs63Cellxgene CensusThis skill provides programmatic access to the CZ CELLxGENE Census, a versioned collection of 61M+ standardized single cells with metadata and expression matrices. Researchers use it for population-scale single-cell analysis and ML training with scanpy or PyTorch.24installs64Clinical ReportsThis skill writes comprehensive clinical reports across case reports, diagnostic reports, clinical trial reports, and patient documentation with templates and validation tools. Clinicians and researchers use it for compliant healthcare documentation and regulatory submissions.24installs65CobrapyCOBRApy is a Python library for constraint-based reconstruction and analysis of genome-scale metabolic models. A developer uses it to run FBA/FVA, simulate gene knockouts, and read or write SBML/JSON/YAML metabolic models for systems biology.24installs66Cremieux CardioA writing skill for data-driven, evidence-first long-form Twitter posts on medicine and cardiology in the style of Topol, Attia, or Huberman. A developer uses it to present clinical evidence with charts and citations for educated non-specialist audiences.24installs67DeepchemDeepChem is a Python library for machine learning on chemistry and biology data, including molecular property prediction and graph neural networks. A developer uses it for drug-discovery ML with featurization, MoleculeNet datasets, and pretrained models.24installs68DocxA toolkit for creating, editing, and analyzing .docx Word documents via text extraction, raw XML access, and redlining workflows. A developer uses it for professional document processing including tracked changes and content manipulation.24installs69Drugbank DatabaseProvides programmatic access to DrugBank's ~9,591 drug entries with 200+ data fields including interactions, targets, and pharmacology. A developer uses it for drug discovery, drug-drug interaction analysis, and target identification.24installs70Ena DatabaseAccesses the European Nucleotide Archive for nucleotide sequences, raw reads, and genome assemblies through REST APIs and FTP. A developer uses it to retrieve sequence data by accession and integrate it into bioinformatics pipelines.24installs71EsmESM provides protein language models including ESM3 for generative protein design and ESM C for efficient embeddings. A developer uses it for protein engineering, sequence/structure/function prediction, and generating protein representations.24installs72FlowioFlowIO is a lightweight Python library for reading and writing FCS flow cytometry files with minimal dependencies. A developer uses it to parse FCS metadata, extract event data as NumPy arrays, and convert cytometry files in data pipelines.24installs73FluidsimFluidSim is an object-oriented Python framework for high-performance CFD using pseudospectral FFT methods. A developer uses it to run Navier-Stokes, shallow water, and stratified-flow simulations and analyze turbulence and vortex dynamics.24installs74GeopandasGeoPandas extends pandas with geometric types for spatial operations on vector geographic data. A developer uses it for spatial joins, coordinate transformations, buffer/overlay analysis, and mapping with matplotlib/folium.24installs75Ggetgget is a command-line and Python toolkit providing unified access to 20+ genomic databases and analysis methods. A developer uses it for quick gene lookups, BLAST searches, protein structures, and expression or disease-association queries.24installs76HistolabHistolab is a Python library for processing whole slide images in digital pathology, automating tissue detection and tile extraction. A developer uses it to prepare gigapixel WSI datasets (SVS, TIFF, NDPI) for computational-pathology deep learning.24installs77Literature Reviewliterature-review is a Claude Code skill for ai & agent building. It helps solo builders move faster with AI-assisted development.24installs78MatchmsMatchms is a Python library for mass spectrometry data processing that imports multiple spectral formats, standardizes metadata, and computes similarities like cosine and modified cosine. A developer uses it to build reproducible metabolomics and compound-identification workflows.24installs79MatplotlibMatplotlib is Python's foundational plotting library, covered here via both the pyplot and object-oriented Figure/Axes APIs for publication-quality figures. A developer uses it to build scientific and statistical visualizations and multi-panel figures.24installs80Metabolomics Workbench DatabaseProvides programmatic access to the NIH Metabolomics Workbench repository for metabolite structures, standardized nomenclature, and mass-spectrometry searches. A developer uses it for metabolomics and biomarker-discovery queries against study and compound data.24installs81NetworkxNetworkX is a Python package for building and analyzing complex networks and graphs, from social to biological to citation networks. A developer uses it to run graph algorithms, detect communities, and visualize network topologies.24installs82Opentargets DatabaseOpen Targets integrates genetics, omics, literature, and chemical data to score target-disease associations, accessed here via its GraphQL API. A developer uses it to identify and prioritize therapeutic drug targets and assess druggability and safety.24installs83Peer ReviewA structured peer-review toolkit for evaluating manuscripts and grant proposals with constructive, rigorous assessment across disciplines. A developer or researcher uses it to check methodology, statistics, reproducibility, and reporting-guideline compliance.24installs84Perplexity SearchProvides access to Perplexity Sonar models through OpenRouter for real-time, web-grounded answers with source citations. A developer uses it to find current information and recent literature beyond the model's training cutoff.24installs85PlotlyPlotly is a Python graphing library for interactive, publication-quality visualizations with 40+ chart types. A developer uses Plotly Express for quick charts or graph objects for fine-grained control, outputting interactive HTML or static images.24installs86Protocolsio IntegrationProvides full integration with the protocols.io API v3 for programmatic protocol discovery, authoring, publishing, and collaboration. A developer uses it to manage lab protocol repositories and build tools on top of protocols.io.24installs87Pubchem DatabasePubChem is the largest free chemical database, queried here through the PUG-REST API and PubChemPy. A developer uses it for structure search, molecular property retrieval, and similarity or substructure searches in cheminformatics.24installs88PylabrobotPyLabRobot is a hardware-agnostic Python SDK for automating liquid handlers, plate readers, and other lab equipment across operating systems. A developer uses it to program pipetting robots, manage deck layouts, and simulate protocols before running on physical hardware.24installs89PymatgenPymatgen is a Python materials-analysis library for creating and analyzing crystal structures, phase diagrams, and electronic structure. A developer uses it for computational materials science, file-format conversion, and Materials Project database access.24installs90PyopenmsPyOpenMS provides Python bindings to OpenMS for computational mass spectrometry. A developer uses it to handle mzML/mzXML files, run signal processing, and perform feature detection and quantitative analysis.24installs91PysamPysam is a Python module wrapping htslib for reading and writing genomic datasets. A developer uses it in bioinformatics pipelines to process alignments, variants, sequences, and compute coverage.24installs92Pytorch LightningPyTorch Lightning is a deep learning framework that removes PyTorch boilerplate while keeping full flexibility. A developer uses it to structure models, configure Trainers, and scale training with DDP, FSDP, or DeepSpeed.24installs93Research LookupResearch Lookup performs real-time research information retrieval using Perplexity's Sonar models through OpenRouter. A developer uses it to verify literature, gather cited sources, and check facts against current research.24installs94Scientific BrainstormingScientific Brainstorming is a conversational process for generating novel research ideas. A developer uses it to form hypotheses, challenge assumptions, and develop methodologies for creative scientific problem-solving.24installs95Scientific Critical ThinkingScientific Critical Thinking is a systematic process for evaluating scientific rigor. A developer uses it to assess experimental design, detect confounding, and grade evidence quality when reviewing claims or papers.24installs96Scientific Writingscientific-writing is a Claude Code skill for ai & agent building. It helps solo builders move faster with AI-assisted development.24installs97SeabornSeaborn is a Python visualization library for statistical graphics built on matplotlib. A developer uses it for dataset-oriented plotting, multivariate analysis, and multi-panel figures with built-in statistical estimation.24installs98VaexVaex is a high-performance Python library for lazy, out-of-core DataFrames on datasets too large for RAM. A developer uses it for fast aggregations, big-data visualization, and ML pipelines on billions of rows.24installs99Benchling IntegrationThis skill integrates with Benchling, a life-sciences R&D platform, to access registry sequences, inventory, electronic lab notebook entries, and workflows via the Python SDK and REST API. Developers use it to automate lab data management and query the Benchling Data Warehouse.23installs100BiomniBiomni is Stanford's open-source biomedical AI agent framework that autonomously decomposes and executes complex research tasks with code execution and integrated databases. Researchers use it for CRISPR screen design, single-cell analysis, ADMET prediction, GWAS interpretation, and rare disease diagnosis.23installs101BiopythonBiopython is a comprehensive Python toolkit for molecular biology, covering sequence handling, file I/O, NCBI Entrez access, BLAST, alignments, PDB structures, and phylogenetics. Developers use it for computational molecular biology and Python-based PubMed/NCBI queries.23installs102Biorxiv DatabaseThis skill provides Python tools to search and retrieve preprints from the bioRxiv server by keyword, author, date, and category, returning structured JSON metadata. Researchers use it for literature reviews, tracking authors, and downloading preprint PDFs.23installs103CirqCirq is Google Quantum AI's Python framework for designing, simulating, and running quantum circuits on simulators and hardware. Developers use it for quantum algorithm design, noise modeling, and experiments like VQE, QAOA, and QPE.23installs104Clinicaltrials DatabaseThis skill searches ClinicalTrials.gov through its public API v2 by condition, drug, location, status, or phase and retrieves study details by NCT ID. Researchers use it for patient matching, trial trend analysis, and data export.23installs105Clinpgx DatabaseThis skill accesses ClinPGx, the successor to PharmGKB, consolidating PharmGKB, CPIC, and PharmCAT data on how genetic variation affects drug response. Clinicians use it for gene-drug interactions, CPIC guidelines, allele functions, and genotype-guided dosing.23installs106Clinvar DatabaseThis skill queries NCBI ClinVar for relationships between human genetic variants and phenotypes, retrieving clinical significance classifications and supporting evidence. Genomics researchers use it to interpret pathogenicity, resolve conflicting interpretations, and annotate variant call sets.23installs107Cosmic DatabaseProvides programmatic access to COSMIC, the catalogue of somatic mutations in cancer, including mutations, curated gene lists, signatures, and fusions. A developer uses it for cancer genomics research and precision oncology pipelines.23installs108DaskDask is a Python library for parallel and distributed computing that scales pandas/NumPy workloads across cores and clusters. A developer uses it to process larger-than-memory datasets, parallelize computations, and build custom task graphs.23installs109Datacommons ClientA client for the Data Commons Python API that queries statistical observations and explores a unified public-data knowledge graph. A developer uses it to pull population, GDP, unemployment, or disease-prevalence data and resolve geographic entities.23installs110DatamolDatamol is a lightweight Pythonic abstraction over RDKit for molecular cheminformatics with sensible defaults and parallelization. A developer uses it for standard drug-discovery tasks like standardization, descriptors, fingerprints, and clustering.23installs111DeeptoolsdeepTools is a suite of command-line tools for processing and visualizing high-throughput sequencing data. A developer uses it for QC, normalization, and publication-quality heatmaps/profiles in ChIP-seq, RNA-seq, and ATAC-seq analyses.23installs112DenarioDenario is a multiagent AI system built on AG2 and LangGraph that automates research from data analysis through publication. A developer uses it to generate hypotheses, develop methodology, run computational experiments, and write journal-formatted LaTeX papers.23installs113DiffdockDiffDock is a diffusion-based deep learning tool that predicts 3D binding poses of ligands to protein targets for structure-based drug design. A developer uses it for pose prediction and virtual screening, combined with scoring functions for affinity.23installs114Dnanexus IntegrationAn integration skill for the DNAnexus cloud genomics platform covering app/applet builds, data management, and the dxpy SDK. A developer uses it to develop and run genomics pipelines processing FASTQ, BAM, and VCF files.23installs115Ensembl DatabaseAccesses the Ensembl genome database REST API covering 250+ species for gene annotations, sequences, variants, and comparative genomics. A developer uses it for gene lookups, VEP variant analysis, ortholog finding, and coordinate conversion.23installs116EtetoolkitETE is a Python toolkit for phylogenetic and hierarchical tree analysis, manipulation, and visualization. A developer uses it for phylogenomics: tree I/O, traversal, topology editing, evolutionary event detection, and PDF/SVG rendering.23installs117Exploratory Data Analysisexploratory-data-analysis is a Claude Code skill for ai & agent building. It helps solo builders move faster with AI-assisted development.23installs118Fda DatabaseAccesses FDA regulatory data through the openFDA API across drugs, devices, foods, and substances. A developer uses it to query adverse events, labeling, recalls, NDC/UNII codes, and device clearances for safety and regulatory analysis.23installs119Gene DatabaseAccesses the NCBI Gene database through E-utilities and the Datasets API for gene nomenclature, sequences, pathways, and phenotypes. A developer uses it to search genes by symbol or ID, retrieve annotations, and run batch gene lookups.23installs120GenimlGeniml is a Python package for machine learning on genomic interval data from BED files with unsupervised embedding methods. A developer uses it to train region embeddings, analyze single-cell ATAC-seq, and build consensus peak universes.23installs121Geo DatabaseAccesses NCBI's Gene Expression Omnibus repository of over 264,000 studies for high-throughput expression and genomics data. A developer uses it to search and download microarray/RNA-seq datasets and integrate GEO data into analysis workflows.23installs122Get Available ResourcesA utility that detects system resources (CPU cores, GPUs, memory, disk) and writes a JSON report with strategic compute recommendations. A developer uses it before intensive scientific tasks to decide on parallel, out-of-core, or GPU-accelerated approaches.23installs123GtarsGtars is a high-performance Rust toolkit with Python bindings for genomic interval analysis. A developer uses it for overlap detection, coverage-track generation, ML tokenization, and fragment analysis in computational genomics.23installs124Gwas DatabaseAccesses the NHGRI-EBI GWAS Catalog of curated SNP-trait associations from thousands of GWAS publications. A developer uses it to find variant-disease associations, look up rs IDs, and retrieve p-values and summary statistics for genetic epidemiology.23installs125Hmdb DatabaseAccesses the Human Metabolome Database of 220K+ metabolites with chemical, clinical, and spectral data. A developer uses it for metabolomics, biomarker discovery, and metabolite identification via name, ID, or structure searches.23installs126HypogenicHypogenic is a framework for automated hypothesis generation and testing using large language models. A developer uses it to generate hypotheses from datasets, integrate literature with empirical data, and test them against observational data.23installs127Labarchive IntegrationProvides scripted access to the LabArchives ELN REST API for notebook automation, backups, entry and attachment management, and reporting. A developer uses it to programmatically integrate lab notebook data with third-party research tools.23installs128LamindbLaminDB is an open-source data framework for biology that makes datasets queryable, traceable, and FAIR through a Python API with lineage tracking and ontology validation. A developer uses it to manage scRNA-seq, spatial, or flow-cytometry data and connect workflow managers and MLOps platforms.23installs129Latchbio IntegrationLatch is a Python framework for defining and deploying bioinformatics pipelines as serverless, auto-containerized workflows on Flyte. A developer uses it to create typed workflows, manage cloud data, configure CPU/GPU resources, and run verified pipelines like bulk RNA-seq and AlphaFold.23installs130Mcp ManagementProvides scripts to manage Model Context Protocol servers, letting agents discover and call tools across multiple servers without polluting the main context. A developer uses it to select task-relevant MCP tools, execute them programmatically, and cache a persistent tool catalog.23installs131MedchemMedchem is a Python library that applies hundreds of molecular filters, structural alerts, and drug-likeness rules to triage compound libraries at scale. A developer uses it to prioritize compounds for lead optimization and flag reactive or problematic groups.23installs132Modalmodal is a Claude Code skill for ai & agent building. It helps solo builders move faster with AI-assisted development.23installs133MolfeatMolfeat is a Python library that unifies 100+ molecular featurizers and pretrained embeddings into scikit-learn-compatible transformers with caching. A developer uses it for QSAR modeling, virtual screening, and molecular deep learning.23installs134Neurokit2NeuroKit2 is a Python toolkit for processing and analyzing physiological signals across cardiac, neural, autonomic, respiratory, and muscular domains. A developer uses it for HRV analysis, event-related potentials, and psychophysiology research.23installs135Omero IntegrationOMERO is an open-source platform for managing and analyzing microscopy images, accessed here through omero-py. A developer uses it to retrieve datasets, analyze pixel data, manage ROIs and annotations, and run high-content screening workflows.23installs136Openalex DatabaseOpenAlex is an open catalog of scholarly works, authors, and institutions queried through a Python client with no API key required. A developer uses it for literature searches, citation tracking, and bibliometric studies.23installs137PathmlPathML is a computational pathology toolkit for loading, preprocessing, and modeling whole-slide and multiplex imaging data. A developer uses it for H&E and immunofluorescence workflows including nucleus segmentation, spatial graphs, and deep-learning training.23installs138Pdb DatabaseRCSB PDB is the worldwide repository of 3D macromolecular structures, queried here through the rcsbapi Python package. A developer uses it to search structures, retrieve coordinates and metadata, and run batch operations for structural biology and drug discovery.23installs139PennylanePennyLane is a cross-platform Python library for quantum computing, quantum machine learning, and quantum chemistry with autodifferentiable circuits. A developer uses it for variational algorithms (VQE, QAOA), quantum neural networks, and hybrid quantum-classical models.23installs140PolarsPolars is a fast DataFrame library built on Apache Arrow with an expression API and lazy evaluation. A developer uses it for high-performance data manipulation, pandas migration, and pipeline optimization.23installs141Pydeseq2PyDESeq2 is a Python implementation of DESeq2 for differential expression analysis of bulk RNA-seq count data. A developer uses it to run single- and multi-factor designs, correct for batch effects, and identify DE genes in Python pipelines.23installs142PydicomPydicom is a pure-Python package for working with DICOM medical imaging files including pixel data, metadata, and compressed formats. A developer uses it for medical image analysis, anonymization, and PACS/radiology workflow integration.23installs143PyhealthPyHealth is a healthcare AI toolkit with a five-stage pipeline for loading clinical data, defining prediction tasks, and training models like RETAIN and SafeDrug. A developer uses it for mortality, readmission, and drug-recommendation tasks on EHR and physiological data.23installs144Pymc Bayesian ModelingPyMC is a Python library for Bayesian modeling and probabilistic programming, covering hierarchical models, NUTS sampling, and posterior checks. A developer uses it for principled uncertainty quantification and model comparison.23installs145PytdcPyTDC is a platform providing curated, AI-ready datasets and benchmarks across the drug discovery pipeline. A developer uses it to benchmark models, predict molecular properties, and access scaffold-split datasets.23installs146QiskitQiskit is an open-source quantum computing framework for building and running quantum circuits. A developer uses it to construct circuits, optimize for hardware, and execute on simulators or real quantum computers.23installs147QutipQuTiP is a Python toolbox for simulating and analyzing quantum mechanical systems. A developer uses it to model quantum states, operators, and dynamics for both unitary and dissipative systems.23installs148Reactome DatabaseReactome Database is a curated pathway resource queried via REST API for pathway and enrichment analysis. A developer uses it to map genes to pathways, run overrepresentation analysis, and explore disease pathways.23installs149ScanpyScanpy is a scalable Python toolkit for single-cell RNA-seq analysis built on AnnData. A developer uses it for QC, dimensionality reduction, clustering, cell-type annotation, and trajectory inference.23installs150Scikit Learnscikit-learn is the industry-standard Python library for classical machine learning. A developer uses it for supervised and unsupervised learning, preprocessing, hyperparameter tuning, and production-ready ML pipelines.23installs151Scikit Survivalscikit-survival is a Python library for survival analysis built on scikit-learn, handling censored time-to-event data. A developer uses it to fit Cox models and ensemble survival models and evaluate with concordance index or Brier score.23installs152Scvi Toolsscvi-tools is a PyTorch/Lightning framework of probabilistic models for single-cell genomics. A developer uses it for batch correction, multimodal integration, dimensionality reduction, and cell-type annotation across modalities.23installs153ShapSHAP is a unified approach to explaining ML model outputs using Shapley values. A developer uses it to compute feature importance, generate interpretability plots, and analyze model bias and fairness.23installs154SimpySimPy is a process-based discrete-event simulation framework built on standard Python. A developer uses it to model manufacturing, service operations, network traffic, and logistics with processes, queues, and resources.23installs155StatsmodelsStatsmodels is Python's library for statistical modeling, inference, and diagnostics. A developer uses it for regression, generalized linear models, time series analysis, and rigorous econometric testing.23installs156String DatabaseSTRING Database provides known and predicted protein-protein interactions queried via REST API. A developer uses it for network analysis, GO/KEGG enrichment, and interaction discovery in systems biology.23installs157SympySymPy is a Python library for symbolic mathematics using exact computation rather than numerical approximation. A developer uses it for algebra, calculus, symbolic linear algebra, physics calculations, and code generation.23installs158TorchdrugTorchDrug is a PyTorch-based machine learning toolbox for drug discovery and molecular science. A developer uses it for molecular property prediction, protein modeling, knowledge-graph reasoning, and retrosynthesis with GNNs.23installs159Torch GeometricPyTorch Geometric (PyG) is a PyTorch library for developing and training graph neural networks. A developer uses it for geometric deep learning on graphs, heterogeneous data, and molecular structures.23installs160TransformersHugging Face Transformers provides access to thousands of pre-trained models across NLP, vision, audio, and multimodal domains. A developer uses it for inference and fine-tuning on custom datasets.23installs161Umap LearnUMAP-Learn is a fast nonlinear dimensionality reduction technique for visualization and manifold learning. A developer uses it for embeddings that preserve local and global structure and to preprocess data before clustering.23installs162Uniprot DatabaseUniProt Database provides direct REST API access to protein sequence and functional information. A developer uses it to search proteins, retrieve FASTA sequences, map identifiers across databases, and access annotations.23installs163Zarr PythonGuides using the Zarr Python library to store large chunked, compressed N-dimensional arrays for cloud-native scientific computing. A developer uses it to configure chunking, compression, and S3/GCS-backed array pipelines.23installs164AdaptyvThis skill integrates with Adaptyv, a cloud laboratory platform for automated protein testing, letting you submit experiments via API, track status, and download binding, expression, and thermostability results. Protein designers use it to get wet-lab validation and computationally optimize sequences.22installs165AeonAeon is a scikit-learn compatible Python toolkit for time series machine learning across classification, regression, clustering, forecasting, anomaly detection, and segmentation. Developers use it when temporal data needs specialized algorithms beyond standard ML approaches.22installs166Alphafold DatabaseThis skill accesses the AlphaFold Database of over 200 million AI-predicted protein structures, retrieving structures by UniProt ID and analyzing confidence metrics. Researchers use it for structural biology, drug discovery, and modeling proteins that lack experimental structures.22installs167AnndataAnnData is a Python package for handling annotated data matrices, storing measurements alongside observation and variable metadata, widely used in single-cell genomics. Developers use it to read/write h5ad files, manage sparse or backed data, and integrate with scanpy and scverse tools.22installs168ArboretoArboreto is a Python library that infers gene regulatory networks from gene expression data using parallelized GRNBoost2 and GENIE3 algorithms. Researchers use it to identify transcription factor-target relationships from bulk or single-cell RNA-seq data at scale.22installs169Brenda DatabaseThis skill accesses the BRENDA enzyme database via its SOAP API to retrieve kinetic parameters, reaction equations, substrate specificities, and organism data. Researchers use it for biochemical research, metabolic engineering, and enzyme discovery.22installs170PymooPymoo is a Python framework for multi-objective optimization using algorithms like NSGA-II/III and MOEA/D. A developer uses it to find Pareto-optimal solutions for engineering and design problems with conflicting objectives.22installs171PdfA PDF toolkit for programmatic document processing covering text/table extraction, creation, merge/split, and form filling. A developer uses it to automate document workflows and analysis.21installs172PptxA PowerPoint toolkit for creating, editing, and analyzing .pptx files as underlying XML archives. A developer uses it to generate or modify presentations, including layouts, speaker notes, and comments.21installs173Xlsxxlsx is a Claude Code skill for ai & agent building. It helps solo builders move faster with AI-assisted development.19installs174Infographic CopyTransforms research, clinical algorithms, and comparison data into information-dense infographic copy across several layout templates. A developer uses it to prepare scannable, reference-worthy text plus JSON handoff data before generating a single-image infographic.7installs175System AwarenessSystem Awareness is a meta-skill that manages all other skills by observing gaps and proposing new capabilities. A developer uses it to log unmet needs, review the skill backlog, and sync context files after skill changes.7installs176Visual Design SystemGenerates template-driven medical infographics from clinical data using the AntV Infographic framework. A creator uses it to produce publication-ready charts like trial timelines, mechanism steps, and treatment comparisons.6installs