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epigen/CellWhisperer

1 skill · 0 installs · 215 stars · GitHub

Install

npx skills add https://github.com/epigen/CellWhisperer

Skills in this repo

1CellwhispererCellWhisperer is an agent skill for AI-assisted single-cell RNA-seq analysis aimed at researchers and bioinformatics developers who need repeatable dataset processing plus flexible scoring. You invoke it when you are normalizing count matrices, preparing objects for annotation, driving cell-level scores through a hosted API, or falling back to local inference when latency, cost, or data residency rules require it. The skill compresses procedural steps that usually sprawl across Scanpy-style pipelines, ad hoc REST calls, and model READMEs into one conversational workflow your coding agent can follow. It fits developers shipping internal analysis tools, ML-backed cell-type helpers, or reproducible CLI utilities—not casual spreadsheet users. Complexity sits at intermediate: expect comfort with Python scientific stacks and basic genomics concepts. Always validate statistical choices, batch correction, and API payloads against your study design; agent suggestions are starting points for peer-reviewed or regulated workflows.0installs

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epigen/CellWhisperer · 1 skills · Skillselion