Protocol Reverse Engineering

Protocol Reverse Engineering

Comprehensive techniques for capturing, analyzing, and documenting network protocols for security research, interoperability, and debugging.

Use this skill when

• Working on protocol reverse engineering tasks or workflows
• Needing guidance, best practices, or checklists for protocol reverse engineering

Do not use this skill when

• The task is unrelated to protocol reverse engineering
• You need a different domain or tool outside this scope

Instructions

• Clarify goals, constraints, and required inputs.
• Apply relevant best practices and validate outcomes.
• Provide actionable steps and verification.
• If detailed examples are required, open resources/implementation-playbook.md.

Resources

• resources/implementation-playbook.md for detailed patterns and examples.

Limitations

• Use this skill only when the task clearly matches the scope described above.
• Do not treat the output as a substitute for environment-specific validation, testing, or expert review.
• Stop and ask for clarification if required inputs, permissions, safety boundaries, or success criteria are missing.

Protocol Reverse Engineering Implementation Playbook

This file contains detailed patterns, checklists, and code samples referenced by the skill.

Protocol Reverse Engineering

Comprehensive techniques for capturing, analyzing, and documenting network protocols for security research, interoperability, and debugging.

Traffic Capture

Wireshark Capture

# Capture on specific interface
wireshark -i eth0 -k

# Capture with filter
wireshark -i eth0 -k -f "port 443"

# Capture to file
tshark -i eth0 -w capture.pcap

# Ring buffer capture (rotate files)
tshark -i eth0 -b filesize:100000 -b files:10 -w capture.pcap

tcpdump Capture

# Basic capture
tcpdump -i eth0 -w capture.pcap

# With filter
tcpdump -i eth0 port 8080 -w capture.pcap

# Capture specific bytes
tcpdump -i eth0 -s 0 -w capture.pcap  # Full packet

# Real-time display
tcpdump -i eth0 -X port 80

Man-in-the-Middle Capture

# mitmproxy for HTTP/HTTPS
mitmproxy --mode transparent -p 8080

# SSL/TLS interception
mitmproxy --mode transparent --ssl-insecure

# Dump to file
mitmdump -w traffic.mitm

# Burp Suite
# Configure browser proxy to 127.0.0.1:8080

Protocol Analysis

Wireshark Analysis

# Display filters
tcp.port == 8080
http.request.method == "POST"
ip.addr == 192.168.1.1
tcp.flags.syn == 1 && tcp.flags.ack == 0
frame contains "password"

# Following streams
Right-click > Follow > TCP Stream
Right-click > Follow > HTTP Stream

# Export objects
File > Export Objects > HTTP

# Decryption
Edit > Preferences > Protocols > TLS
  - (Pre)-Master-Secret log filename
  - RSA keys list

tshark Analysis

# Extract specific fields
tshark -r capture.pcap -T fields -e ip.src -e ip.dst -e tcp.port

# Statistics
tshark -r capture.pcap -q -z conv,tcp
tshark -r capture.pcap -q -z endpoints,ip

# Filter and extract
tshark -r capture.pcap -Y "http" -T json > http_traffic.json

# Protocol hierarchy
tshark -r capture.pcap -q -z io,phs

Scapy for Custom Analysis

from scapy.all import *

# Read pcap
packets = rdpcap("capture.pcap")

# Analyze packets
for pkt in packets:
    if pkt.haslayer(TCP):
        print(f"Src: {pkt[IP].src}:{pkt[TCP].sport}")
        print(f"Dst: {pkt[IP].dst}:{pkt[TCP].dport}")
        if pkt.haslayer(Raw):
            print(f"Data: {pkt[Raw].load[:50]}")

# Filter packets
http_packets = [p for p in packets if p.haslayer(TCP)
                and (p[TCP].sport == 80 or p[TCP].dport == 80)]

# Create custom packets
pkt = IP(dst="target")/TCP(dport=80)/Raw(load="GET / HTTP/1.1\r\n")
send(pkt)

Protocol Identification

Common Protocol Signatures

HTTP        - "HTTP/1." or "GET " or "POST " at start
TLS/SSL     - 0x16 0x03 (record layer)
DNS         - UDP port 53, specific header format
SMB         - 0xFF 0x53 0x4D 0x42 ("SMB" signature)
SSH         - "SSH-2.0" banner
FTP         - "220 " response, "USER " command
SMTP        - "220 " banner, "EHLO" command
MySQL       - 0x00 length prefix, protocol version
PostgreSQL  - 0x00 0x00 0x00 startup length
Redis       - "*" RESP array prefix
MongoDB     - BSON documents with specific header

Protocol Header Patterns

+--------+--------+--------+--------+
|  Magic number / Signature         |
+--------+--------+--------+--------+
|  Version       |  Flags          |
+--------+--------+--------+--------+
|  Length        |  Message Type   |
+--------+--------+--------+--------+
|  Sequence Number / Session ID     |
+--------+--------+--------+--------+
|  Payload...                       |
+--------+--------+--------+--------+

Binary Protocol Analysis

Structure Identification

# Common patterns in binary protocols

# Length-prefixed message
struct Message {
    uint32_t length;      # Total message length
    uint16_t msg_type;    # Message type identifier
    uint8_t  flags;       # Flags/options
    uint8_t  reserved;    # Padding/alignment
    uint8_t  payload[];   # Variable-length payload
};

# Type-Length-Value (TLV)
struct TLV {
    uint8_t  type;        # Field type
    uint16_t length;      # Field length
    uint8_t  value[];     # Field data
};

# Fixed header + variable payload
struct Packet {
    uint8_t  magic[4];    # "ABCD" signature
    uint32_t version;
    uint32_t payload_len;
    uint32_t checksum;    # CRC32 or similar
    uint8_t  payload[];
};

Python Protocol Parser

import struct
from dataclasses import dataclass

@dataclass
class MessageHeader:
    magic: bytes
    version: int
    msg_type: int
    length: int

    @classmethod
    def from_bytes(cls, data: bytes):
        magic, version, msg_type, length = struct.unpack(
            ">4sHHI", data[:12]
        )
        return cls(magic, version, msg_type, length)

def parse_messages(data: bytes):
    offset = 0
    messages = []

    while offset < len(data):
        header = MessageHeader.from_bytes(data[offset:])
        payload = data[offset+12:offset+12+header.length]
        messages.append((header, payload))
        offset += 12 + header.length

    return messages

# Parse TLV structure
def parse_tlv(data: bytes):
    fields = []
    offset = 0

    while offset < len(data):
        field_type = data[offset]
        length = struct.unpack(">H", data[offset+1:offset+3])[0]
        value = data[offset+3:offset+3+length]
        fields.append((field_type, value))
        offset += 3 + length

    return fields

Hex Dump Analysis

def hexdump(data: bytes, width: int = 16):
    """Format binary data as hex dump."""
    lines = []
    for i in range(0, len(data), width):
        chunk = data[i:i+width]
        hex_part = ' '.join(f'{b:02x}' for b in chunk)
        ascii_part = ''.join(
            chr(b) if 32 <= b < 127 else '.'
            for b in chunk
        )
        lines.append(f'{i:08x}  {hex_part:<{width*3}}  {ascii_part}')
    return '\n'.join(lines)

# Example output:
# 00000000  48 54 54 50 2f 31 2e 31  20 32 30 30 20 4f 4b 0d  HTTP/1.1 200 OK.
# 00000010  0a 43 6f 6e 74 65 6e 74  2d 54 79 70 65 3a 20 74  .Content-Type: t

Encryption Analysis

Identifying Encryption

# Entropy analysis - high entropy suggests encryption/compression
import math
from collections import Counter

def entropy(data: bytes) -> float:
    if not data:
        return 0.0
    counter = Counter(data)
    probs = [count / len(data) for count in counter.values()]
    return -sum(p * math.log2(p) for p in probs)

# Entropy thresholds:
# < 6.0: Likely plaintext or structured data
# 6.0-7.5: Possibly compressed
# > 7.5: Likely encrypted or random

# Common encryption indicators
# - High, uniform entropy
# - No obvious structure or patterns
# - Length often multiple of block size (16 for AES)
# - Possible IV at start (16 bytes for AES-CBC)

TLS Analysis

# Extract TLS metadata
tshark -r capture.pcap -Y "ssl.handshake" \
    -T fields -e ip.src -e ssl.handshake.ciphersuite

# JA3 fingerprinting (client)
tshark -r capture.pcap -Y "ssl.handshake.type == 1" \
    -T fields -e ssl.handshake.ja3

# JA3S fingerprinting (server)
tshark -r capture.pcap -Y "ssl.handshake.type == 2" \
    -T fields -e ssl.handshake.ja3s

# Certificate extraction
tshark -r capture.pcap -Y "ssl.handshake.certificate" \
    -T fields -e x509sat.printableString

Decryption Approaches

# Pre-master secret log (browser)
export SSLKEYLOGFILE=/tmp/keys.log

# Configure Wireshark
# Edit > Preferences > Protocols > TLS
# (Pre)-Master-Secret log filename: /tmp/keys.log

# Decrypt with private key (if available)
# Only works for RSA key exchange
# Edit > Preferences > Protocols > TLS > RSA keys list

Custom Protocol Documentation

Protocol Specification Template

# Protocol Name Specification

## Overview
Brief description of protocol purpose and design.

## Transport
- Layer: TCP/UDP
- Port: XXXX
- Encryption: TLS 1.2+

## Message Format

### Header (12 bytes)
| Offset | Size | Field       | Description              |
|--------|------|-------------|--------------------------|
| 0      | 4    | Magic       | 0x50524F54 ("PROT")     |
| 4      | 2    | Version     | Protocol version (1)     |
| 6      | 2    | Type        | Message type identifier  |
| 8      | 4    | Length      | Payload length in bytes  |

### Message Types
| Type | Name          | Description              |
|------|---------------|--------------------------|
| 0x01 | HELLO         | Connection initiation    |
| 0x02 | HELLO_ACK     | Connection accepted      |
| 0x03 | DATA          | Application data         |
| 0x04 | CLOSE         | Connection termination   |

### Type 0x01: HELLO
| Offset | Size | Field       | Description              |
|--------|------|-------------|--------------------------|
| 0      | 4    | ClientID    | Unique client identifier |
| 4      | 2    | Flags       | Connection flags         |
| 6      | var  | Extensions  | TLV-encoded extensions   |

## State Machine

[INIT] --HELLO--> [WAIT_ACK] --HELLO_ACK--> [CONNECTED] | DATA/DATA | [CLOSED] <--CLOSE--+

## Examples
### Connection Establishment

Client -> Server: HELLO (ClientID=0x12345678) Server -> Client: HELLO_ACK (Status=OK) Client -> Server: DATA (payload)

Wireshark Dissector (Lua)

-- custom_protocol.lua
local proto = Proto("custom", "Custom Protocol")

-- Define fields
local f_magic = ProtoField.string("custom.magic", "Magic")
local f_version = ProtoField.uint16("custom.version", "Version")
local f_type = ProtoField.uint16("custom.type", "Type")
local f_length = ProtoField.uint32("custom.length", "Length")
local f_payload = ProtoField.bytes("custom.payload", "Payload")

proto.fields = { f_magic, f_version, f_type, f_length, f_payload }

-- Message type names
local msg_types = {
    [0x01] = "HELLO",
    [0x02] = "HELLO_ACK",
    [0x03] = "DATA",
    [0x04] = "CLOSE"
}

function proto.dissector(buffer, pinfo, tree)
    pinfo.cols.protocol = "CUSTOM"

    local subtree = tree:add(proto, buffer())

    -- Parse header
    subtree:add(f_magic, buffer(0, 4))
    subtree:add(f_version, buffer(4, 2))

    local msg_type = buffer(6, 2):uint()
    subtree:add(f_type, buffer(6, 2)):append_text(
        " (" .. (msg_types[msg_type] or "Unknown") .. ")"
    )

    local length = buffer(8, 4):uint()
    subtree:add(f_length, buffer(8, 4))

    if length > 0 then
        subtree:add(f_payload, buffer(12, length))
    end
end

-- Register for TCP port
local tcp_table = DissectorTable.get("tcp.port")
tcp_table:add(8888, proto)

Active Testing

Fuzzing with Boofuzz

from boofuzz import *

def main():
    session = Session(
        target=Target(
            connection=TCPSocketConnection("target", 8888)
        )
    )

    # Define protocol structure
    s_initialize("HELLO")
    s_static(b"\x50\x52\x4f\x54")  # Magic
    s_word(1, name="version")       # Version
    s_word(0x01, name="type")       # Type (HELLO)
    s_size("payload", length=4)     # Length field
    s_block_start("payload")
    s_dword(0x12345678, name="client_id")
    s_word(0, name="flags")
    s_block_end()

    session.connect(s_get("HELLO"))
    session.fuzz()

if __name__ == "__main__":
    main()

Replay and Modification

from scapy.all import *

# Replay captured traffic
packets = rdpcap("capture.pcap")
for pkt in packets:
    if pkt.haslayer(TCP) and pkt[TCP].dport == 8888:
        send(pkt)

# Modify and replay
for pkt in packets:
    if pkt.haslayer(Raw):
        # Modify payload
        original = pkt[Raw].load
        modified = original.replace(b"client", b"CLIENT")
        pkt[Raw].load = modified
        # Recalculate checksums
        del pkt[IP].chksum
        del pkt[TCP].chksum
        send(pkt)

Best Practices

Analysis Workflow

1. Capture traffic: Multiple sessions, different scenarios 2. Identify boundaries: Message start/end markers 3. Map structure: Fixed header, variable payload 4. Identify fields: Compare multiple samples 5. Document format: Create specification 6. Validate understanding: Implement parser/generator 7. Test edge cases: Fuzzing, boundary conditions

Common Patterns to Look For

• Magic numbers/signatures at message start
• Version fields for compatibility
• Length fields (often before variable data)
• Type/opcode fields for message identification
• Sequence numbers for ordering
• Checksums/CRCs for integrity
• Timestamps for timing
• Session/connection identifiers