Histai Skillsets
Connect Claude Code, Codex, or Gemini CLI agents to HistAI CellDX for cohort building, GPU training jobs, monitoring, and slide-level AI analysis on whole slide images.
Overview
histai-skillsets is a plugin marketplace for the Build phase that integrates AI coding agents with HistAI CellDX for cohort export, GPU model training, job monitoring, and slide AI analysis.
What is this marketplace?
- 4 skills: Cohort Builder (Data Hub), CellDX AI Autopilot (Model Trainer), Training Monitor, Slide Analyzer
- Cohort Builder searches cases by diagnosis, organ, age, stains, and exports WSI with metadata and cost-aware selective d
- Autopilot runs full or quick Azure GPU training pipelines through deployment as widgets
- Training Monitor provides epoch metrics, stop/resume/adjust, strategy comparison, and model deployment
- Slide Analyzer uploads to My Cases, installs widgets from store or custom models, returns segmentation masks
- 4 bundled skills: Cohort Builder, CellDX AI Autopilot, Training Monitor, Slide Analyzer
- Autopilot supports full multi-strategy pipeline and quick single-model mode
- Platform access requires subscription plus 2FA on CellDX
Community signal: 6 GitHub stars.
What problem does it solve?
Pathology ML teams juggle separate UIs and APIs for cohort export, Azure training, live job control, and slide inference instead of driving it from their agent IDE.
Who is it for?
Researchers and ML engineers on CellDX who use Claude Code, Codex, or Gemini CLI and want agent-native HistAI operations across data hub, training, and inference.
Skip if: General indie web or mobile builders without pathology workloads, or anyone without an active CellDX subscription and 2FA enabled.
What do I get? / Deliverables
After enabling the four skills with a subscribed CellDX account, agents can search cohorts, launch and monitor training, deploy widgets, and run slide analysis from the terminal workflow.
- Agent-driven cohort searches, exports, and cost-managed WSI downloads
- Submitted training jobs with monitoring, deployment, and slide-level widget results including masks
Plugins in this marketplace
4 plugins — install individually after you add the marketplace.
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Journey fit
The skills are integration layers to a production pathology AI platform, which builders wire in while constructing research or diagnostic workflows rather than at pure ideation. Integrations is the canonical shelf because all four skills call CellDX APIs and platform workflows (Data Hub, Autopilot, monitor, analyzer) from coding agents.
How it compares
Domain-specific CellDX platform integration marketplace, not a generic coding skill or public MCP directory entry.
Common Questions / FAQ
Who is Histai Skillsets for?
It is for CellDX subscribers building computational pathology workflows who want coding agents to manage cohorts, training jobs, and slide analysis securely.
When should I use Histai Skillsets?
Use it when you need to export WSIs and metadata, train or monitor classification models on Azure GPU, or run widgets on your slides from within an AI coding agent.
How do I add Histai Skillsets to my agent?
Install the marketplace or individual skills per the HistAI skillsets repository instructions, authenticate to CellDX with 2FA enabled, and invoke the Cohort Builder, Autopilot, Monitor, or Analyzer skills from your supported CLI agent.