Now liveThe Skillselion MCP - thousands of ranked skills, loaded into your agent mid-task. No install.Get it →
iliaal avatar

Ia Agent Native Architecture

  • 3 installs
  • 28 repo stars
  • Updated August 5, 2026
  • iliaal/whetstone

Guides designing agent-native applications where agents replace UI users as the primary actor, using files, primitive tools, and system prompts.

About

A skill for designing agent-native systems governed by five principles (parity, granularity, composability, emergent capability, improvement over time) across 15 focus areas. A developer uses it when designing MCP tools, agent-loop architectures, shared-workspace file patterns, or self-modifying agent systems.

  • Five agent-native principles each with a one-line design test
  • Focus areas from tool design and context injection to self-modification

Ia Agent Native Architecture by the numbers

  • 3 all-time installs (skills.sh)
  • Ranked #13,677 of 16,546 AI & Agent Building skills by installs in the Skillselion catalog
  • Data as of Aug 5, 2026 (Skillselion catalog sync)
npx skills add https://github.com/iliaal/whetstone --skill ia-agent-native-architecture

Add your badge

Show developers this skill is listed on Skillselion. Paste this into your README.

Listed on Skillselion
Installs3
repo stars28
Last updatedAugust 5, 2026
Repositoryiliaal/whetstone

What it does

Guides designing agent-native applications where agents replace UI users as the primary actor, using files, primitive tools, and system prompts.

Files

SKILL.mdMarkdownGitHub ↗

Agent-Native Architecture

Core Principles

Five principles govern agent-native design. For detailed explanations, examples, and test criteria, see core-principles.md.

PrincipleOne-line test
ParityCan the agent achieve every outcome the UI allows?
GranularityTo change behavior, do you edit prose or refactor code?
ComposabilityCan you add a feature by writing a new prompt, without new code?
Emergent CapabilityCan the agent handle open-ended requests you didn't design for?
Improvement Over TimeDoes the app work better after a month, even without code changes?

Focus Area Selection

1. Design architecture - Plan a new agent-native system from scratch 2. Files & workspace - Use files as the universal interface, shared workspace patterns 3. Tool design - Build primitive tools, dynamic capability discovery, CRUD completeness 4. Domain tools - Know when to add domain tools vs stay with primitives 5. Execution patterns - Completion signals, partial completion, context limits 6. System prompts - Define agent behavior in prompts, judgment criteria 7. Context injection - Inject runtime app state into agent prompts 8. Action parity - Ensure agents can do everything users can do 9. Self-modification - Enable agents to safely evolve themselves 10. Product design - Progressive disclosure, latent demand, approval patterns 11. Mobile patterns - iOS storage, background execution, checkpoint/resume 12. Testing - Test agent-native apps for capability and parity 13. Refactoring - Make existing code more agent-native 14. Anti-patterns - Common mistakes and how to avoid them 15. Success criteria - Verify your architecture is agent-native 16. Hooks patterns - Hook events, decision control, MCP matchers, async hooks

Wait for response before proceeding.

Reference Routing

ResponseAction
1, "design", "architecture", "plan"Read architecture-patterns.md, then apply Architecture Checklist below
2, "files", "workspace", "filesystem"Read files-universal-interface.md and shared-workspace-architecture.md
3, "tool", "mcp", "primitive", "crud"Read mcp-tool-design.md
4, "domain tool", "when to add"Read from-primitives-to-domain-tools.md
5, "execution", "completion", "loop"Read agent-execution-patterns.md
6, "prompt", "system prompt", "behavior"Read system-prompt-design.md
7, "context", "inject", "runtime", "dynamic"Read dynamic-context-injection.md
8, "parity", "ui action", "capability map"Read action-parity-discipline.md
9, "self-modify", "evolve", "git"Read self-modification.md
10, "product", "progressive", "approval", "latent demand"Read product-implications.md
11, "mobile", "ios", "android", "background", "checkpoint"Read mobile-patterns.md
11a, "icloud", "storage", "documents", "file state", "entitlement"Read mobile-storage.md
11b, "background task", "battery", "on-device", "cloud routing"Read mobile-execution.md
11c, "model tier", "token budget", "cost-aware", "batch", "caching"Read mobile-cost.md
12, "test", "testing", "verify", "validate"Read agent-native-testing.md
13, "review", "refactor", "existing"Read refactoring-to-prompt-native.md
14, "anti-pattern", "mistake", "wrong"Read anti-patterns.md
15, "success", "criteria", "verify", "checklist"Read success-criteria.md
16, "hook", "hooks", "PreToolUse", "decision control", "async hook"Read hooks-patterns.md
0, "quick start", "getting started", "overview", "introduction"Read quick-start.md

After reading the reference, apply those patterns to the user's specific context.

Architecture Review Checklist

When designing an agent-native system, verify these before implementation:

Core Principles

  • [ ] Parity: Every UI action has a corresponding agent capability
  • [ ] Granularity: Tools are primitives; features are prompt-defined outcomes
  • [ ] Composability: New features can be added via prompts alone
  • [ ] Emergent Capability: Agent can handle open-ended requests in your domain

Tool Design

  • [ ] Dynamic vs Static: For external APIs where agent should have full access, use Dynamic Capability Discovery
  • [ ] CRUD Completeness: Every entity has create, read, update, AND delete
  • [ ] Primitives over Workflows: Tools expose atomic capabilities; compose workflows in prompts
  • [ ] API as Validator: Use z.string() inputs when the API validates, not z.enum()
  • [ ] Eval Gate: 10 Q/A pairs in CI (read-only, multi-hop, closed-data), 9/10 pass threshold. See mcp-tool-design.md Evaluation section.

Files & Workspace

  • [ ] Shared Workspace: Agent and user work in same data space
  • [ ] context.md Pattern: Agent reads/updates context file for accumulated knowledge
  • [ ] File Organization: Entity-scoped directories with consistent naming
  • [ ] Context Durability: Incremental progress writes (WAL pattern) so interrupted tasks resume from last checkpoint

Agent Execution

  • [ ] Completion Signals: Agent has explicit complete_task tool (not heuristic detection)
  • [ ] Partial Completion: Multi-step tasks track progress for resume
  • [ ] Context Limits: Designed for bounded context from the start
  • [ ] Validate-Before-Run: Agent previews planned actions before executing destructive operations

Context Injection

  • [ ] Available Resources: System prompt includes what exists (files, data, types)
  • [ ] Available Capabilities: System prompt documents tools with user vocabulary
  • [ ] Dynamic Context: Context refreshes for long sessions (or provide refresh_context tool)
  • [ ] Trust levels for loaded content: System prompt distinguishes trusted (developer-authored) from untrusted (user input, retrieved docs, tool outputs); untrusted text is data, never instructions. See dynamic-context-injection.md Trust Levels section for the prompt-injection defense details.

UI Integration

  • [ ] Agent -> UI: Agent changes reflect in UI (shared service, file watching, or event bus)
  • [ ] No Silent Actions: Agent writes trigger UI updates immediately
  • [ ] Capability Discovery: Users can learn what agent can do

Governance

  • [ ] Approval Gates: Destructive or irreversible actions require user confirmation
  • [ ] Audit Trail: Agent actions logged with timestamp, tool, and outcome
  • [ ] Scope Boundaries: Agent cannot access resources outside its designated workspace

Hooks & Governance Automation

  • [ ] Event Coverage: Only 6 hook events fire in agent context (PreToolUse, PostToolUse, PermissionRequest, PostToolUseFailure, Stop/SubagentStop); session lifecycle logic lives in the orchestrator
  • [ ] Decision Gates: PreToolUse hooks enforce tool-level policy (allow/deny/ask/defer) instead of hardcoded checks
  • [ ] Completion Gating: SubagentStop hooks block premature completion when verification steps remain
  • [ ] MCP Matchers: Regex patterns target tools by server and operation for capability-based security
  • [ ] Two-Tier Config: Shared policy committed, personal overrides git-ignored, per-hook disable toggles

Mobile (if applicable)

  • [ ] Checkpoint/Resume: Handle iOS app suspension gracefully
  • [ ] iCloud Storage: iCloud-first with local fallback for multi-device sync
  • [ ] Cost Awareness: Model tier selection (Haiku/Sonnet/Opus)

When designing architecture, explicitly address each checkbox in your plan.

Related skills

AI & Agent Buildingagentsautomation

This week in AI coding

Five minutes, every Monday - the tools, releases and tactics for developers.

unsubscribe anytime.