Now liveThe Skillselion MCP - thousands of ranked skills, loaded into your agent mid-task. No install.Get it →
mongodb avatar

Mongodb Schema Design

  • 3.7k installs
  • 165 repo stars
  • Updated August 2, 2026
  • mongodb/agent-skills

mongodb-schema-design is a MongoDB skill that applies schema patterns and anti-patterns so developers can model documents around access patterns and avoid lookup-heavy or oversized designs.

About

mongodb-schema-design is a MongoDB-maintained skill that guides data modeling patterns and anti-patterns when schema mistakes drive performance and cost problems queries cannot fix. It organizes guidance into anti-patterns such as unnecessary collections, excessive lookups, and unnecessary indexes, plus fundamentals on embed versus reference, the document model, schema validation, and the 16MB document limit. Eleven design patterns cover approximation, archive, attribute, bucket, computed, document versioning, extended reference, outlier, polymorphic, schema versioning, and time series collections. The core principle states data accessed together should be stored together, with a decision framework for one-to-one, one-to-few, one-to-many, and many-to-many relationships. Reference files include incorrect versus correct examples, when-not-to-use exceptions, and verification diagnostics. Optional MongoDB MCP integration can infer schema, measure document sizes, and check index usage in read-only mode with explicit approval before writes. Developers reach for mongodb-schema-design when designing new schemas, migrating from SQL, reviewing models, or troubleshooting slow queries and gro.

  • Covers 3 anti-patterns, 4 fundamentals, and 11 design patterns with linked references.
  • Embed versus reference framework keyed to cardinality and access patterns.
  • Documents 16MB document limit causes and schema validation with JSON Schema.
  • Optional MongoDB MCP read-only checks for schema, sizes, and index usage.
  • Explicit write approval policy before any destructive MCP operations.

Mongodb Schema Design by the numbers

  • 3,659 all-time installs (skills.sh)
  • +198 installs in the week ending Aug 2, 2026 (Skillselion tracking)
  • Ranked #27 of 911 Databases skills by installs in the Skillselion catalog
  • Security screen: MEDIUM risk (skills.sh audit)
  • Data as of Aug 3, 2026 (Skillselion catalog sync)
At a glance

mongodb-schema-design capabilities & compatibility

Capabilities
route tasks to anti pattern and pattern referenc · apply embed reference decision framework by card · recommend schema validation levels and json sche · optional mcp schema inference and document size
Works with
mongodb
From the docs

What mongodb-schema-design says it does

Data that is accessed together should be stored together.
SKILL.md
MongoDB documents cannot exceed 16MB—this is a hard limit, not a guideline.
SKILL.md
npx skills add https://github.com/mongodb/agent-skills --skill mongodb-schema-design

Add your badge

Show developers this skill is listed on Skillselion. Paste this into your README.

Listed on Skillselion
Installs3.7k
repo stars165
Security audit2 / 3 scanners passed
Last updatedAugust 2, 2026
Repositorymongodb/agent-skills

How should I model MongoDB documents when embed versus reference, unbounded arrays, or over-normalization is hurting query performance?

Design, review, and troubleshoot MongoDB schemas using embed-versus-reference patterns and documented anti-patterns.

Who is it for?

Developers designing new MongoDB schemas, migrating from SQL, or reviewing Atlas performance warnings and document growth issues.

Skip if: Skip when you only need query tuning or index hints without revisiting document structure and relationship modeling.

When should I use this skill?

User mentions embed vs reference, schema review, unbounded arrays, 16MB limit, schema validation, or MongoDB data model design.

What you get

Schema recommendations grounded in MongoDB patterns with reference links, examples, and optional MCP-backed verification of real collection stats.

  • Schema design guidance
  • Pattern and anti-pattern recommendations

By the numbers

  • 3 schema anti-patterns
  • 4 schema fundamentals
  • 11 design patterns

Files

SKILL.mdMarkdownGitHub ↗

MongoDB Schema Design

Data modeling patterns and anti-patterns for MongoDB, maintained by MongoDB. Bad schema is the root cause of most MongoDB performance and cost issues—queries and indexes cannot fix a fundamentally wrong model.

When to Apply

Reference these guidelines when:

  • Designing a new MongoDB schema from scratch
  • Migrating from SQL/relational databases to MongoDB
  • Reviewing existing data models for performance issues
  • Troubleshooting slow queries or growing document sizes
  • Deciding between embedding and referencing
  • Modeling relationships (one-to-one, one-to-many, many-to-many)
  • Implementing tree/hierarchical structures
  • Seeing Atlas Schema Suggestions or Performance Advisor warnings
  • Hitting the 16MB document limit
  • Adding schema validation to existing collections

Quick Reference

1. Schema Anti-Patterns - 3 rules

  • antipattern-unnecessary-collections - Splitting homogeneous data into multiple collections is often an anti-pattern; consult this reference to validate whether this is the case.
  • antipattern-excessive-lookups - When encountering overly normalized collections that reference each other or frequent and possibly slow $lookup operations, consult this reference to validate whether this is problematic and how to fix it.
  • antipattern-unnecessary-indexes - Consult this reference when indexes overlap or are not used by queries, to identify and remove unnecessary indexes that add overhead without benefit.

2. Schema Fundamentals - 4 rules

  • fundamental-embed-vs-reference - Consult this reference for approaches to modeling different types of relationships (1:1, 1:few, 1:many, many:many, tree/hierarchical data) and how to decide between embedding and referencing based on access patterns.
  • fundamental-document-model - Fundamentals of the document model. Consult this reference when migrating from SQL or other normalized data to a document database like MongoDB.
  • fundamental-schema-validation - Consult this reference when creating new collections, or adding validation to existing collections, for example in response to finding inconsistent document structures or data quality issues.
  • fundamental-document-size - Consult this reference when documents hit the hard 16MB limit, or when accesses are slower than expected as a result of large documents.

3. Design Patterns - 11 rules

  • pattern-approximation - Use approximate values for high-frequency counters
  • pattern-archive - Move historical data to separate/cold storage for performance
  • pattern-attribute - Collapse many optional fields into key-value attributes
  • pattern-bucket - Group time-series or IoT data into buckets
  • pattern-computed - Pre-calculate expensive aggregations
  • pattern-document-versioning - Track document changes to enable historical queries and audit trails
  • pattern-extended-reference - Cache frequently-accessed data from related entities
  • pattern-outlier - Handle collections in which a small subset of documents are much larger than the rest, to prevent outliers from dominating memory and index costs
  • pattern-polymorphic - Store different types of entities in the same collection, often when they are different types of the same base entity (e.g. different types of users or different types of products)
  • pattern-schema-versioning - Schema evolution, preventing drift, and safe online migrations. Consult when encountering inconsistent document structures, or when planning a schema change that cannot be applied atomically.
  • pattern-time-series-collections - Use native time series collections for high-frequency time series data

Key Principle

"Data that is accessed together should be stored together."

This is MongoDB's core philosophy. Embedding related data eliminates joins, reduces round trips, and enables atomic updates. Reference only when you must.

A core way to implement this philosophy is the fact that MongoDB exposes flexible schemas. This means you can have different fields in different documents, and even different structures. This allows you to model data in the way that best fits your access patterns, without being constrained by a rigid schema. For example, if different documents have different sets of fields, that is perfectly fine as long as it serves your application's needs. You can also use schema validation to enforce certain rules while still allowing for flexibility.

Another implication of the key principle is that information about the expected read and write workload becomes very relevant to schema design. If pieces of information from different entities are often queried or updated together, that means that prioritizing co-location of that data in the same document can lead to significant performance benefits. On the other hand, if certain pieces of information are rarely accessed together, it may make sense to store them separately to avoid loading more data than necessary.

Schema Fundamentals Summary
  • Embed vs Reference: Choose embedding or referencing based on access patterns: embed when data is always accessed together (1:1, 1:few, bounded arrays, atomic updates needed); reference when data is accessed independently, relationships are many-to-many, or arrays can grow without bound.
  • Data accessed together stored together: MongoDB's core principle: design schemas around queries, not entities. Embed related data to eliminate cross-collection joins and reduce round trips. Identify your API endpoints/pages, list the data each returns, then shape documents to match those queries.
  • Embrace the document model: Don't recreate SQL tables 1:1 as MongoDB collections. Instead, denormalize joined tables into rich documents for single-query reads and atomic updates. When migrating from SQL, identify tables that are always joined together and merge them into single documents.
  • Schema validation: Use MongoDB's built-in $jsonSchema validator to catch invalid data at the database level (type checks, required fields, enum constraints, array size limits). Start with validationLevel: "moderate" and validationAction: "warn" on existing collections, then tighten to strict/error.
  • 16MB document limit: MongoDB documents cannot exceed 16MB—this is a hard limit, not a guideline. Common causes: unbounded arrays, large embedded binaries, deeply nested objects. Mitigate by moving unbounded data to separate collections and monitoring document sizes with $bsonSize.

Embed/Reference Decision Framework

RelationshipCardinalityAccess PatternRecommendation
One-to-One1:1Always togetherEmbed
One-to-Few1:N (N < 100)Usually togetherEmbed array
One-to-Many1:N (N > 100)Often separateReference
Many-to-ManyM:NVariesTwo-way reference

This is a rough guideline, and whether to embed or reference depends on your specific access patterns, data size, and read/write frequencies. Always verify with your actual workload.

How to Use

Each reference file listed above contains detailed explanations and code examples. Use the descriptions in the Quick Reference to identify which files are relevant to your current task.

Each reference file contains:

  • Brief explanation of why it matters
  • Incorrect code example with explanation
  • Correct code example with explanation
  • "When NOT to use" exceptions
  • Performance impact and metrics
  • Verification diagnostics

---

How These Rules Work

MongoDB MCP Integration

For automatic verification, connect the MongoDB MCP Server.

If the MCP server is running and connected, I can automatically run verification commands to check your actual schema, document sizes, array lengths, index usage, and more. This allows me to provide tailored recommendations based on your real data, not just code patterns.

⚠️ Security: Use --readOnly for safety. Remove only if you need write operations.

When connected, I can automatically:

  • Infer schema via mcp__mongodb__collection-schema
  • Measure document/array sizes via mcp__mongodb__aggregate
  • Check collection statistics via mcp__mongodb__db-stats

⚠️ Action Policy

I will NEVER execute write operations without your explicit approval.

Before any write or destructive operation via MCP, I will: (1) summarize the exact operation (collection, index/validator, estimated number of docs affected), and (2) ask for explicit confirmation (yes/no). I will not proceed on partial or ambiguous approvals.

Operation TypeMCP ToolsAction
Read (Safe)find, aggregate, collection-schema, db-stats, countI may run automatically to verify
Write (Requires Approval)update-many, insert-many, create-collectionI will show the command and wait for your "yes"
Destructive (Requires Approval)delete-many, drop-collection, drop-databaseI will warn you and require explicit confirmation

When I recommend schema changes or data modifications: 1. I'll explain what I want to do and why 2. I'll show you the exact command 3. I'll wait for your approval before executing 4. If you say "go ahead" or "yes", only then will I run it

Your database, your decision. I'm here to advise, not to act unilaterally.

Working Together

If you're not sure about a recommendation: 1. Run the verification commands I provide 2. Share the output with me 3. I'll adjust my recommendation based on your actual data

We're a team—let's get this right together.

Related skills

Forks & variants (1)

Mongodb Schema Design has 1 known copy in the catalog totaling 36 installs. They canonicalize to this original listing.

How it compares

Use mongodb-schema-design over generic SQL normalization guidance when MongoDB aggregation $lookup cost is the bottleneck.

FAQ

When should I embed versus reference in MongoDB?

Embed when data is accessed together and arrays stay bounded; reference when relationships are large, many-to-many, or accessed independently.

Does the skill change my database automatically?

No. Write operations via MCP require explicit approval with a summarized operation before proceeding.

What triggers mongodb-schema-design?

Phrases like design schema, embed vs reference, schema review, unbounded arrays, 16MB limit, or schema validation.

Is Mongodb Schema Design safe to install?

skills.sh reports 2 of 3 security scanners passed. Review the Security Audits panel on this page before installing in production.

Databasesbackendintegrations

This week in AI coding

Five minutes, every Monday - the tools, releases and tactics for developers.

unsubscribe anytime.