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Agent Md Refactor

  • 4k installs
  • 2.3k repo stars
  • Updated March 5, 2026
  • softaworks/agent-toolkit

Reorganized agent instruction files split into minimal root plus topic-specific linked files following progressive disclosure principles.

About

Agent MD Refactor helps developers reorganize monolithic agent instruction files (AGENTS.md, CLAUDE.md, COPILOT.md) using progressive disclosure principles. It keeps essential project information at the root file (under 50 lines) and splits remaining guidelines into organized, linked topic files like typescript.md, testing.md, code-style.md, and architecture.md. The skill guides a five-phase workflow: finding contradictions, extracting essentials, categorizing remaining content, creating file hierarchy, and flagging redundant instructions for deletion. Developers use this when instruction files grow unwieldy, lose clarity, or waste context tokens. The output is a flat, navigable documentation structure where each linked file is self-contained and the root file contains only universal rules that apply to every task. Five-phase refactoring workflow: analyze contradictions, extract essentials, categorize, structure hierarchy, prune redundancy Progressive disclosure keeps root file under 50 lines with links to

  • Five-phase refactoring workflow: analyze contradictions, extract essentials, categorize, structure hierarchy, prune redu
  • Progressive disclosure keeps root file under 50 lines with links to topic-specific files (TypeScript, testing, code-styl
  • Identifies and removes vague, redundant, or outdated instructions that waste agent context tokens
  • Provides templates for root file and linked files with actionable rules, rule categories, and examples
  • Verification checklist ensures minimal root, working links, no contradictions, and self-contained topic files

Agent Md Refactor by the numbers

  • 3,968 all-time installs (skills.sh)
  • +16 installs in the week ending Aug 5, 2026 (Skillselion tracking)
  • Ranked #102 of 1,879 Documentation skills by installs in the Skillselion catalog
  • Security screen: LOW risk (skills.sh audit)
  • Data as of Aug 5, 2026 (Skillselion catalog sync)
At a glance

agent-md-refactor capabilities & compatibility

Capabilities
identify contradictory instructions · extract essential vs. non essential content · group instructions into logical categories · generate root and linked file templates · flag redundant and vague instructions for deleti · create file hierarchy and verify links
Use cases
documentation · refactoring · code review
Runs
Runs locally
npx skills add https://github.com/softaworks/agent-toolkit --skill agent-md-refactor

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Listed on Skillselion
Installs4k
repo stars2.3k
Security audit3 / 3 scanners passed
Last updatedMarch 5, 2026
Repositorysoftaworks/agent-toolkit

What it does

Refactor bloated agent instruction files into progressive disclosure structure with minimal root and linked topic files.

Who is it for?

Developers maintaining agent instruction files for Claude, Copilot, or custom agents; teams standardizing code guidance.

Skip if: Single-task projects with minimal configuration; real-time agent runtime optimization; agent training or model fine-tuning.

When should I use this skill?

Agent instruction file exceeds 100 lines; instructions contain contradictions; developer needs to reduce context waste; onboarding new team members.

What you get

Minimal root file (under 50 lines) linked to 3-8 self-contained topic files with actionable, specific instructions and no redundancy.

  • Reorganized agent instruction markdown with progressive-disclosure sections

By the numbers

  • Root file should be under 50 lines after refactoring
  • Organize into 3-8 linked files (common: typescript.md, testing.md, code-style.md, git-workflow.md, architecture.md)
  • Five-phase workflow: contradictions, essentials, categorize, structure, prune

Files

SKILL.mdMarkdownGitHub ↗

Agent MD Refactor

Refactor bloated agent instruction files (AGENTS.md, CLAUDE.md, COPILOT.md, etc.) to follow progressive disclosure principles - keeping essentials at root and organizing the rest into linked, categorized files.

---

Triggers

Use this skill when:

  • "refactor my AGENTS.md" / "refactor my CLAUDE.md"
  • "split my agent instructions"
  • "organize my CLAUDE.md file"
  • "my AGENTS.md is too long"
  • "progressive disclosure for my instructions"
  • "clean up my agent config"

---

Quick Reference

PhaseActionOutput
1. AnalyzeFind contradictionsList of conflicts to resolve
2. ExtractIdentify essentialsCore instructions for root file
3. CategorizeGroup remaining instructionsLogical categories
4. StructureCreate file hierarchyRoot + linked files
5. PruneFlag for deletionRedundant/vague instructions

---

Process

Phase 1: Find Contradictions

Identify any instructions that conflict with each other.

Look for:

  • Contradictory style guidelines (e.g., "use semicolons" vs "no semicolons")
  • Conflicting workflow instructions
  • Incompatible tool preferences
  • Mutually exclusive patterns

For each contradiction found:

## Contradiction Found

**Instruction A:** [quote]
**Instruction B:** [quote]

**Question:** Which should take precedence, or should both be conditional?

Ask the user to resolve before proceeding.

---

Phase 2: Identify the Essentials

Extract ONLY what belongs in the root agent file. The root should be minimal - information that applies to every single task.

Essential content (keep in root):

CategoryExample
Project descriptionOne sentence: "A React dashboard for analytics"
Package managerOnly if not npm (e.g., "Uses pnpm")
Non-standard commandsCustom build/test/typecheck commands
Critical overridesThings that MUST override defaults
Universal rulesApplies to 100% of tasks

NOT essential (move to linked files):

  • Language-specific conventions
  • Testing guidelines
  • Code style details
  • Framework patterns
  • Documentation standards
  • Git workflow details

---

Phase 3: Group the Rest

Organize remaining instructions into logical categories.

Common categories:

CategoryContents
typescript.mdTS conventions, type patterns, strict mode rules
testing.mdTest frameworks, coverage, mocking patterns
code-style.mdFormatting, naming, comments, structure
git-workflow.mdCommits, branches, PRs, reviews
architecture.mdPatterns, folder structure, dependencies
api-design.mdREST/GraphQL conventions, error handling
security.mdAuth patterns, input validation, secrets
performance.mdOptimization rules, caching, lazy loading

Grouping rules: 1. Each file should be self-contained for its topic 2. Aim for 3-8 files (not too granular, not too broad) 3. Name files clearly: {topic}.md 4. Include only actionable instructions

---

Phase 4: Create the File Structure

Output structure:

project-root/
├── CLAUDE.md (or AGENTS.md)     # Minimal root with links
└── .claude/                      # Or docs/agent-instructions/
    ├── typescript.md
    ├── testing.md
    ├── code-style.md
    ├── git-workflow.md
    └── architecture.md

Root file template:

# Project Name

One-sentence description of the project.

## Quick Reference

- **Package Manager:** pnpm
- **Build:** `pnpm build`
- **Test:** `pnpm test`
- **Typecheck:** `pnpm typecheck`

## Detailed Instructions

For specific guidelines, see:
- [TypeScript Conventions](.claude/typescript.md)
- [Testing Guidelines](.claude/testing.md)
- [Code Style](.claude/code-style.md)
- [Git Workflow](.claude/git-workflow.md)
- [Architecture Patterns](.claude/architecture.md)

Each linked file template:

# {Topic} Guidelines

## Overview
Brief context for when these guidelines apply.

## Rules

### Rule Category 1
- Specific, actionable instruction
- Another specific instruction

### Rule Category 2
- Specific, actionable instruction

## Examples

### Good
\`\`\`typescript
// Example of correct pattern
\`\`\`

### Avoid
\`\`\`typescript
// Example of what not to do
\`\`\`

---

Phase 5: Flag for Deletion

Identify instructions that should be removed entirely.

Delete if:

CriterionExampleWhy Delete
Redundant"Use TypeScript" (in a .ts project)Agent already knows
Too vague"Write clean code"Not actionable
Overly obvious"Don't introduce bugs"Wastes context
Default behavior"Use descriptive variable names"Standard practice
OutdatedReferences deprecated APIsNo longer applies

Output format:

## Flagged for Deletion

| Instruction | Reason |
|-------------|--------|
| "Write clean, maintainable code" | Too vague to be actionable |
| "Use TypeScript" | Redundant - project is already TS |
| "Don't commit secrets" | Agent already knows this |
| "Follow best practices" | Meaningless without specifics |

---

Execution Checklist

[ ] Phase 1: All contradictions identified and resolved
[ ] Phase 2: Root file contains ONLY essentials
[ ] Phase 3: All remaining instructions categorized
[ ] Phase 4: File structure created with proper links
[ ] Phase 5: Redundant/vague instructions removed
[ ] Verify: Each linked file is self-contained
[ ] Verify: Root file is under 50 lines
[ ] Verify: All links work correctly

---

Anti-Patterns

AvoidWhyInstead
Keeping everything in rootBloated, hard to maintainSplit into linked files
Too many categoriesFragmentationConsolidate related topics
Vague instructionsWastes tokens, no valueBe specific or delete
Duplicating defaultsAgent already knowsOnly override when needed
Deep nestingHard to navigateFlat structure with links

---

Examples

Before (Bloated Root)

# CLAUDE.md

This is a React project.

## Code Style
- Use 2 spaces
- Use semicolons
- Prefer const over let
- Use arrow functions
... (200 more lines)

## Testing
- Use Jest
- Coverage > 80%
... (100 more lines)

## TypeScript
- Enable strict mode
... (150 more lines)

After (Progressive Disclosure)

# CLAUDE.md

React dashboard for real-time analytics visualization.

## Commands
- `pnpm dev` - Start development server
- `pnpm test` - Run tests with coverage
- `pnpm build` - Production build

## Guidelines
- [Code Style](.claude/code-style.md)
- [Testing](.claude/testing.md)
- [TypeScript](.claude/typescript.md)

---

Verification

After refactoring, verify:

1. Root file is minimal - Under 50 lines, only universal info 2. Links work - All referenced files exist 3. No contradictions - Instructions are consistent 4. Actionable content - Every instruction is specific 5. Complete coverage - No instructions were lost (unless flagged for deletion) 6. Self-contained files - Each linked file stands alone

---

Related skills

Forks & variants (3)

Agent Md Refactor has 3 known copies in the catalog totaling 295 installs. They canonicalize to this original listing.

How it compares

Pick agent-md-refactor over generic doc-editing skills when the source file is specifically an agent instruction markdown monolith needing token-aware restructuring.

FAQ

How many linked files should I create?

Aim for 3-8 files. Too few loses organization; too many fragments content. Group related topics: typescript, testing, code-style, git-workflow, architecture are common.

What belongs in the root file?

Only content that applies to every task: one-sentence project description, non-standard package managers/commands, critical overrides, universal rules. Everything else moves to linked files.

Should I keep outdated or vague instructions?

No. Flag for deletion: vague instructions (waste tokens), redundant info (agent already knows), outdated references, obvious defaults. Be specific or remove it.

Is Agent Md Refactor safe to install?

skills.sh reports 3 of 3 security scanners passed. Review the Security Audits panel on this page before installing in production.

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