Cellwhisperer Marketplace
- 215 repo stars
- Updated May 12, 2026
- epigen/CellWhisperer
cellwhisperer is a plugin marketplace that exposes Claude Code access to the CellWhisperer scRNA-seq and natural-language research integration stack.
About
The CellWhisperer marketplace is a Claude Code plugin catalog entry for epigen’s CellWhisperer system, a multimodal AI that connects single-cell RNA-seq data with natural language so researchers can explore datasets conversationally. developers and small lab software teams use it when they are building or operating a private instance—importing custom datasets, reproducing paper analyses, or embedding the model beside an internal portal—rather than only using the public Bock Lab web demo. The upstream repository documents Pixi-based installation with submodules, optional CUDA 12 GPU acceleration, and roughly fifteen minutes to a working environment, plus pathways to analyze custom data and cite the Nature Biotechnology publication. The marketplace wrapper helps agent-driven development stay aligned with those official install and structure conventions. It demands comfort with scientific Python ecosystems and GPU drivers where applicable. Skip it for conventional SaaS unless your product explicitly serves computational biology customers who need CellWhisperer-compatible integration guidance.
- Multimodal model linking transcriptomics with natural language for scRNA-seq datasets
- Nature Biotechnology–published stack with public weights and curated training data
- Self-hosted install paths including Pixi on Mac and Linux (~15 minute guided setup)
- CPU and GPU (CUDA 12) environment support for local analysis instances
- Single-plugin marketplace entry focused on computational biology, not general coding agents
Cellwhisperer by the numbers
- Data as of Aug 10, 2026 (Skillselion catalog sync)
/plugin marketplace add epigen/CellWhispererAdd your badge
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| repo stars | ★ 215 |
|---|---|
| Last updated | May 12, 2026 |
| Repository | epigen/CellWhisperer ↗ |
What it does
Add the CellWhisperer marketplace when you are integrating or self-hosting the multimodal scRNA-seq AI so Claude-assisted work targets published CellWhisperer tooling and dataset import flows.
Who is it for?
scientific software developers and lean lab teams self-hosting CellWhisperer or embedding its multimodal transcriptomics AI into internal tools.
Skip if: General web app developers, marketers, or agents-only workflows with no single-cell genomics requirements or GPU/conda tolerance.
What you get
After registering the marketplace and installing the plugin, your Claude sessions can reference the official CellWhisperer integration path for local instances and custom dataset analysis.
- Registered CellWhisperer marketplace source in Claude Code
- Installed CellWhisperer plugin for agent-guided integration tasks
- Documented local instance aligned with official install and dataset import guides
By the numbers
- Marketplace lists 1 plugin
- Upstream install guide cites ~15 minute setup
- Published in Nature Biotechnology with public model weights and training data
Plugins in this marketplace
1 plugin - install individually after you add the marketplace.
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FAQ
Who is Cellwhisperer for?
Cellwhisperer is for developers and computational biologists building self-hosted CellWhisperer environments who want Claude Code plugin discovery tied to the epigen repository.
When should I use Cellwhisperer?
Use it during Build when you are integrating custom scRNA-seq datasets, reproducing published analyses, or wiring local GPU/CPU runtimes for CellWhisperer.
How do I add Cellwhisperer to my agent?
Add the epigen CellWhisperer plugin marketplace in Claude Code, install the listed plugin, then follow the repository Pixi or manual install steps for models and submodules.