k-dense-ai/claude-scientific-skills
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npx skills add https://github.com/k-dense-ai/claude-scientific-skillsSkills in this repo
1Scientific WritingCoaches Claude on scholarly scientific writing across abstracts, methods, results, and discussion. It stresses precise terminology, reproducible reporting, ethical claims, and journal-appropriate tone so drafts read as credible, review-ready research documents rather than generic summaries.174installs2Scientific VisualizationClaude skill for designing and generating scientific data visualizations with appropriate chart types, styling, and narrative clarity for research reports and publications.140installs3Scientific Critical ThinkingSkill teaching Claude scientific critical-thinking patterns to scrutinize assumptions, weigh evidence, identify biases, and improve rigor in research reasoning and analytical conclusions.134installs4PolarsClaude skill for Polars that implements high-performance DataFrame ETL with lazy scans, expression chains, joins, aggregations, and parquet workflows suited to large scientific datasets and reproducible pipelines.132installs5Scientific BrainstormingAgent skill that guides structured scientific brainstorming to produce testable hypotheses, experimental designs, and research directions from ambiguous problems or datasets.130installs6Statistical AnalysisSkill enabling Claude to plan and execute rigorous statistical analyses—including tests, regressions, intervals, and power calculations—for experimental and observational scientific workflows.130installs7Literature ReviewStructures agent-assisted systematic literature reviews for scientific work: designing search strategies across biomedical and CS indexes, screening with explicit inclusion criteria, extracting methods and benchmarks into comparison tables, identifying research gaps, and drafting synthesis prose with properly managed citations for grants, protocols, or study design.129installs8Markitdownmarkitdown skill teaches Claude to convert office and web documents into Markdown using MarkItDown: handling PDFs, DOCX, PPTX, HTML, and similar sources, preserving structure where possible, cleaning output for repos or knowledge bases, and fitting conversions into scientific documentation pipelines.128installs9Scientific SlidesHelps Claude assemble rigorous scientific slide decks for lab meetings, conferences, and defenses. It structures narrative flow, balances text and visuals, and enforces conventions for citations, axes labels, and takeaway slides so presentations communicate methods and results clearly to technical audiences.126installs10Peer ReviewGuides Claude to conduct scholarly peer review: evaluate methods, statistics, claims, and reproducibility; write structured comments with severity levels; and deliver actionable revision guidance before journal submission.124installs11Exploratory Data Analysisexploratory-data-analysis skill guides Claude through structured EDA: loading tabular or scientific datasets, computing descriptive statistics, plotting relationships, flagging quality issues, and translating findings into concrete hypotheses, features, or modeling decisions.122installs12Research LookupEnables Claude to run disciplined scientific research lookup: formulate queries, retrieve relevant papers and datasets, verify claims against sources, and return citation-ready summaries that ground early ideation and competitor or audience research.122installs13SeabornTeaches Claude to produce correct Seaborn statistical visualizations for exploratory and publication workflows. It covers plot selection, aesthetic mapping, faceting, and matplotlib integration so charts are statistically meaningful, reproducible, and suitable for notebooks, reports, and automated analysis pipelines.120installs14Scientific SchematicsGuides Claude through creating accurate scientific schematics and labeled research figures for manuscripts, grants, and presentations. It emphasizes domain-appropriate notation, clear visual hierarchy, and reproducible figure specs so outputs meet academic and regulatory documentation expectations.119installs15Scikit LearnGuides Claude through scikit-learn for tabular ML: construct preprocessing plus estimator pipelines, run cross-validation and grid search, pick appropriate metrics, avoid leakage, and serialize models for reproducible scientific baselines and backend analytics.119installs16Citation ManagementHelps Claude manage scientific citations end to end: import and normalize references, apply journal-specific styles, cross-check DOIs, and embed properly formatted bibliographies into manuscripts, reviews, and grant documentation.118installs17Pptx PostersHelps Claude design scientific conference posters in PowerPoint: plan large-format layouts, arrange figure panels, set print-ready typography, and produce polished PPTX posters for meetings and symposia.118installs18MatplotlibClaude skill for writing Matplotlib code to build scientific visualizations including styled axes, multi-panel layouts, colormaps, annotations, and high-resolution export for papers and dashboards.117installs19PydicomClaude skill for pydicom that implements robust DICOM ingestion—tag inspection, series assembly, pixel rescaling, anonymization, and cohort packaging for radiology research and medical imaging ML pipelines.117installs20PyzoteroShows Claude how to use pyzotero against the Zotero Web API: authenticate, list collections, fetch items and attachments, read notes, and update bibliographic metadata to support literature review and citation workflows during early research.117installs21MatlabSupports MATLAB-centric scientific computing during implementation: vectorized linear algebra, differential equation and optimization solvers, signal and image processing toolboxes, reproducible live scripts, and interoperability patterns for exporting results to Python pipelines, instrumentation, or publication plots in engineering and life-science workflows.116installs22StatsmodelsGuides Claude through statsmodels for classical and time-series statistical modeling in Python: specifying formulas, fitting models, interpreting coefficients, running diagnostics, and exporting results for scientific reports.116installs23Market Research ReportsClaude skill for generating market research reports tailored to scientific and life-sciences contexts, combining domain framing, competitor analysis, and actionable insights for early product decisions.115installs24Scholar EvaluationClaude skill for systematically evaluating scholarly publications, research methodology, citation strength, and reproducibility signals to inform rigorous scientific and product research decisions.115installs25NetworkxSkill guiding Claude to build and analyze graphs with NetworkX for scientific networks, including node-edge modeling, centrality and community metrics, layouts, and interchange with other formats.114installs26DaskDask skill enables Claude to design and debug distributed Python analytics using Dask DataFrames and task graphs, including partitioning, cluster setup, and performance tuning for large scientific datasets.113installs27Research GrantsSupports Claude in drafting competitive research grants: frame specific aims, write significance and innovation, outline approaches and milestones, prepare budget justifications, and align narratives to agency requirements.113installs28ShapClaude skill for applying SHAP explainability to machine learning models, producing feature importance, attribution plots, and interpretable summaries for scientific and compliance use cases.113installs29Umap LearnTeaches Claude to apply UMAP for dimensionality reduction on high-dimensional scientific data. It covers parameter choices, reproducible sklearn pipelines, and integration with clustering and visualization so embeddings support exploratory analysis, quality control, and downstream ML features in research and product analytics.113installs30SympyGuides Claude in using SymPy for symbolic mathematics inside Python scientific stacks. It covers expression construction, simplification, calculus, linear algebra, and LaTeX export so models stay exact, testable, and ready to embed in simulations, APIs, and reproducible research notebooks.112installs31Timesfm ForecastingCovers implementing TimesFM forecasting workflows: data preparation, model loading, horizon and frequency configuration, generating predictions, and evaluating against holdout baselines in scientific or product analytics pipelines.112installs32Venue TemplatesProvides Claude with venue-specific scientific publication templates so manuscripts, abstracts, and supplementary files follow journal and conference formatting rules. Helps select correct LaTeX classes, section structures, citation styles, and submission conventions to reduce desk-reject formatting errors and speed final packaging.112installs33AeonTeaches Claude Code to use the aeon time series machine learning library for building, evaluating, and comparing temporal models. Supports pipeline design, transformer chains, forecasting workflows, and benchmark-ready code in Python scientific repositories.111installs34Markdown Mermaid WritingGuides creation of scientific and engineering documentation that pairs clear Markdown structure with embedded Mermaid diagrams for workflows, sequence interactions, data models, and state machines—optimized for GitHub rendering, static doc sites, and reproducible lab notebooks that stay readable as projects evolve.111installs35PptxInstructs Claude to build and refine scientific PowerPoint presentations: structure findings into slides, embed figures and captions, maintain consistent layouts, and generate speaker notes for talks and lab meetings.111installs36Pytorch LightningEquips Claude to build PyTorch Lightning training systems: define LightningModules and DataModules, configure Trainer with callbacks and loggers, manage checkpoints, and apply distributed strategies for reproducible deep learning backends.111installs37TransformersCovers Hugging Face transformers workflows: selecting checkpoints, tokenization, fine-tuning with Trainer, running inference pipelines, handling GPU memory, and packaging models for deployment in research or product stacks.111installs38BiopythonBioPython-focused Claude Code skill for computational biology tasks including sequence I/O, alignments, motifs, phylogenetics, and NCBI access. Guides agents to write correct, efficient genomics scripts and small pipelines using established BioPython modules and conventions.110installs39Hypothesis Generationhypothesis-generation skill helps Claude produce rigorous scientific hypotheses from context: synthesizing observations, proposing causal mechanisms, defining measurable variables, suggesting controls and experiments, and ranking ideas by feasibility and impact before formal analysis begins.110installs40Latex PostersCovers LaTeX-based academic poster production: picking poster document classes, configuring multi-column layouts, inserting high-resolution figures and bibliographies, meeting common conference dimension requirements, and polishing typography and spacing so research summaries print cleanly at large format with linked code or data artifacts.110installs41Stable Baselines3stable-baselines3 skill guides Claude through reinforcement learning with SB3: wrap Gymnasium environments, select algorithms like PPO or SAC, configure training, log metrics, evaluate policies, and export checkpoints for robotics, games, or control automation projects.110installs42GeomasterHelps Claude use GeoMaster for scientific geospatial work: ingest vector and raster data, manage CRS transformations, run spatial joins and geometric calculations, and pipeline location-aware analytics for environmental, epidemiological, or field-study applications.109installs43PymooPymoo skill equips Claude to formulate multi-objective optimization problems, configure evolutionary algorithms like NSGA-II and MOEA/D, manage constraints and variables, run experiments, and interpret Pareto-optimal solutions for engineering design.109installs44RdkitRDKit skill guides Claude through cheminformatics with RDKit: reading SMILES and mol blocks, sanitizing structures, computing fingerprints and 2D or 3D descriptors, handling reactions, and preparing molecular features for QSAR and generative chemistry pipelines.109installs45RowanRowan skill helps Claude integrate Rowan cloud computational-chemistry workflows: configuring DFT and related calculations, submitting and monitoring jobs, retrieving optimized geometries and energies, and feeding results into pymatgen, RDKit, or custom materials-discovery pipelines.109installs46Scikit BioAgent skill for implementing bioinformatics analyses with scikit-bio, covering sequence processing, phylogenetic methods, and biological data workflows in production Python code.109installs47Torch GeometricGuides PyTorch Geometric usage for defining graph datasets, stacking convolution layers, training on relational data, implementing sampling for large graphs, and exporting embeddings for downstream scientific or recommendation systems.109installs48Bioservicesbioservices is a Claude scientific skill from k-dense-ai/claude-scientific-skills for using the BioServices Python library to query biological databases and web services programmatically. It guides integration of proteomics, genomics, and cheminformatics lookups into scripts, notebooks, and agent tooling without hand-rolling per-provider HTTP clients.108installs49DeepchemGuides Claude through DeepChem for drug-discovery ML: featurize SMILES and graphs, load MoleculeNet-style datasets, train classifiers and regressors, evaluate with cheminformatics metrics, and script reproducible molecular prediction pipelines.108installs50Generate Imagegenerate-image skill guides Claude to produce images for scientific communication: crafting precise prompts, generating diagrams or conceptual illustrations, refining labels and composition, and delivering assets suitable for manuscripts, posters, notebooks, or project documentation.108installs51GeopandasGuides Claude through GeoPandas workflows for scientific and civic geospatial analysis: loading vector datasets, fixing invalid geometries, reprojecting coordinate reference systems, performing spatial joins and aggregations, and producing publication-quality maps or exportable layers for downstream tooling.108installs52Get Available ResourcesClaude scientific skill that researches and lists available resources—datasets, services, and agent-accessible tools—so teams can scope experiments and integrations before building LabArchive or Cirq workflows.108installs53HypogenicClaude skill for hypothesis generation—synthesizing literature, datasets, and prior findings into ranked, testable scientific hypotheses to guide early experimental design and research prioritization.108installs54InfographicsHelps Claude design science-forward infographics that compress complex experimental or epidemiological findings into scannable visual stories: choosing hierarchy, accessible color systems, simplified charts, iconography, and layout templates suitable for lab sites, conferences, grants, and social distribution while preserving numerical accuracy.108installs55Molecular DynamicsClaude skill for molecular dynamics workflows including system preparation, simulation parameters, running engines such as GROMACS or OpenMM, and analyzing protein-ligand structural trajectories.108installs56MolfeatClaude skill for molfeat that engineers consistent molecular features from structures or SMILES for cheminformatics ML, covering featurizer choice, preprocessing, caching, and sklearn-ready training pipelines.108installs57PufferlibSkill for building reinforcement learning systems with PufferLib, covering environment registration, vectorized training loops, policy APIs, and performance tuning for agent simulators and control tasks.108installs58Pydeseq2Claude skill for PyDESeq2 that configures RNA-seq differential expression pipelines—count QC, design matrices, contrasts, dispersion modeling, and exportable DE tables aligned with DESeq2 statistical practice.108installs59PytdcPyTDC skill guides Claude through Therapeutics Data Commons workflows: fetching curated ADME, toxicity, and target-activity datasets, applying official splits, training molecular property models, and reporting benchmark metrics for drug-discovery research.108installs60Scikit SurvivalSkill guiding Claude to build survival analysis with scikit-survival, including Kaplan-Meier estimation, Cox proportional hazards models, and censoring-aware clinical analytics.108installs61TorchdrugTeaches TorchDrug patterns for loading molecular datasets, constructing graph neural networks, training on bioactivity tasks, running inference for screening, and evaluating metrics in computational drug-discovery backends.108installs62Anndataanndata teaches agents to work with the AnnData ecosystem for annotated n-dimensional arrays common in single-cell genomics and scientific computing. It covers loading h5ad/zarr, managing obs/var metadata, subsetting, and writing pipeline-safe transformations in Python.107installs63ArboretoArboreto skill helps Claude run gene regulatory network inference with the Arboreto Python library, covering expression preprocessing, algorithm selection, and interpretation of inferred regulator-target networks.107installs64AstropyScientific agent skill for the Astropy ecosystem enabling correct use of coordinates, units, tables, FITS I/O, modeling, and cosmology utilities. Helps Claude produce standards-compliant astronomy Python for data reduction, catalog analysis, and publication-ready figures.107installs65Benchling IntegrationBenchling-integration guides Claude through Benchling API usage for ELN and LIMS workflows, including authentication, entity retrieval, record updates, and reliable sync with scientific automation pipelines.107installs66Cellxgene CensusCellxgene-census teaches Claude to query the CELLxGENE Census for single-cell datasets, apply organism and tissue filters, inspect metadata, and export cohorts that inform early biological research decisions.107installs67Clinical Decision SupportSkill for prototyping clinical decision support experiences with LLM agents, covering triage logic, evidence presentation, guardrails, and evaluation on synthetic cases. Emphasizes safe scaffolding for healthcare copilots before regulated integrations with EHRs or live patient workflows.107installs68CobrapyTeaches Claude COBRApy patterns for constraint-based metabolic modeling: parse genome-scale models, configure media and objectives, execute FBA and related optimizers, and interpret flux distributions for systems biology and bioengineering analyses.107installs69DeeptoolsDeeptools skill guides Claude through deepTools command-line workflows for NGS data, including alignment QC, coverage normalization, matrix aggregation, and publication-ready heatmaps for ChIP-seq and RNA-seq studies.107installs70GgetClaude skill for the gget Python package—efficiently querying Ensembl, UniProt, NCBI, and related genomic databases for genes, sequences, orthologs, and BLAST results in bioinformatics agent workflows.107installs71GtarsScientific skill for gtars genomic tools—fetching, parsing, and analyzing annotation and association-study resources—so Claude agents can incorporate structured genomics datasets into reproducible research pipelines.107installs72MatchmsGuides Claude to use MatchMS for mass spectrometry import, preprocessing, spectral comparison, and metadata management within Python scientific computing and cheminformatics pipelines.107installs73ModalExplains how to run scientific Python on Modal serverless infrastructure: packaging container images, attaching GPUs, configuring secrets and volumes, exposing web endpoints and cron jobs, and integrating deployments into CI so training, inference, and batch transforms scale elastically without bespoke cluster operations.107installs74Neurokit2Claude skill for NeuroKit2 that guides biosignal ingestion, cleaning, peak detection, HRV and complexity metrics, and reproducible ECG/EEG/EDA analysis pipelines with clear parameter choices.107installs75Protocolsio Integrationprotocolsio-integration teaches Claude how to integrate with protocols.io so scientific builds can discover, retrieve, and manage step-by-step lab protocols programmatically. It targets researchers and bioinformatics teams automating literature-to-bench workflows via agents or APIs.107installs76PyhealthPyHealth skill guides Claude through healthcare machine learning with PyHealth: loading clinical datasets, preprocessing EHR and FHIR records, training diagnosis and outcome predictors, running medical NLP, and evaluating models on standard benchmarks.107installs77QutipQuTiP skill equips Claude to simulate quantum systems using QuTiP: building Hamiltonians and Lindblad operators, evolving states and density matrices, computing observables and spectra, and reproducing standard open-quantum-system and quantum-optics experiments.107installs78ScanpyTeaches Claude scanpy for single-cell transcriptomics: manage AnnData, run QC and normalization, select highly variable genes, compute embeddings and clusters, rank markers, and produce publication-quality plots in reproducible Python pipelines.107installs79Scvi Toolsscvi-tools skill guides Claude through single-cell variational inference: loading AnnData, configuring scVI models, training on RNA-seq counts, correcting batch effects, extracting latent embeddings, and running differential expression for genomics research pipelines.107installs80Usfiscaldatausfiscaldata skill helps Claude query U.S. fiscal and Treasury datasets to validate macro features: discover series, pull receipts and outlays, compare deficits over time, and scope dashboards or forecasting modules grounded in official government statistics.107installs81VaexTeaches Claude to use Vaex for high-performance, memory-efficient scientific data analysis on massive tabular datasets. Covers lazy evaluation, expression-based virtual columns, efficient filtering and groupby operations, and integration with common scientific file formats so agents can explore and transform data that exceeds RAM.107installs82Zarr PythonGuides Claude to implement Zarr-based storage for large multidimensional scientific datasets using chunked, compressed arrays suitable for cloud and HPC environments. Covers store layout, chunk sizing, compression codecs, metadata groups, and Python APIs for efficient partial access patterns common in imaging, genomics, and geospatial workflows.107installs83AdaptyvAgent skill for Adaptyv protein engineering platform usage in Claude Code scientific projects. Covers designing experiments, calling platform endpoints, normalizing outputs, and chaining results into Python analysis for drug discovery and synthetic biology builds.106installs84Bgpt Paper Searchbgpt-paper-search connects agents to BGPT-oriented scientific paper search for biomedical and research domains. It accelerates literature reviews by finding relevant papers, summarizing findings, and assembling citation context for proposals, specs, and experiment design.106installs85Clinical ReportsSupports Claude in authoring clinical study reports and related medical documents: structure CSR sections, translate statistical outputs into plain-language findings, format tables, and maintain consistency with regulatory and clinical writing conventions.106installs86DatamolCheminformatics agent skill for datamol covering molecule standardization, featurization, conformer handling, and dataset preparation in Python. Helps Claude build reliable drug-discovery preprocessing pipelines with validated RDKit-backed operations and reproducible molecular tables.106installs87DiffdockEnables Claude to operate DiffDock for structure-based drug design: prepare PDB inputs, configure docking runs, execute pose prediction, compare binding modes, and translate structural outputs into actionable medicinal chemistry insights.106installs88EsmClaude skill for Meta Evolutionary Scale Modeling (ESM) protein language models—generating embeddings, scoring mutations, and predicting structures for computational biology and drug-discovery agent workflows.106installs89Etetoolkitetetoolkit skill teaches Claude to use the ETE Toolkit Python library for phylogenetics: parsing Newick and related formats, building and traversing trees, annotating nodes, running comparative analyses, and producing figures suitable for scientific reporting.106installs90Flowioflowio skill enables Claude to work with FlowIO for flow cytometry: reading FCS files, interpreting channel and parameter metadata, converting event lists into analyzable tables, and bridging instrument exports into Python pipelines for gating, QC, and population statistics.106installs91Fluidsimfluidsim skill teaches Claude to operate FluidSim for computational fluid dynamics: configuring simulations, launching solvers, managing parameters and checkpoints, extracting velocity or pressure fields, and summarizing numerical results for scientific or engineering review.106installs92GenimlScientific skill guiding genomic machine-learning workflows—feature extraction from sequence or omics data, model training, evaluation, and inference—for Claude agents building life-science analytics pipelines.106installs93Histolabhistolab skill enables Claude to use HistoLab for digital pathology: opening whole-slide images, detecting tissue, generating tiles or patches, managing coordinates at scale, and preparing histology datasets for classification, segmentation, or quantitative image analysis pipelines.106installs94Imaging Data CommonsTeaches how to use the NCI Imaging Data Commons to research cancer imaging cohorts: querying metadata, understanding DICOM organization, selecting TCGA and related collections, and designing reproducible download and preprocessing pipelines for segmentation, radiomics, or multimodal machine learning studies.106installs95Labarchive IntegrationBuild-phase integration skill connecting Claude agents to LabArchive electronic lab notebooks for API-driven notebook access, experiment logging, protocol sync, and automated research recordkeeping workflows.106installs96LamindbClaude skill for LaminDB biological data management—registering datasets, tracking lineage, applying schemas, and querying versioned omics artifacts so agent pipelines stay reproducible and metadata-complete.106installs97MedchemSkill teaching Claude medicinal chemistry practices for evaluating small molecules, applying physicochemical and ADMET filters, and integrating cheminformatics steps in drug discovery software backends.106installs98Neuropixels AnalysisGuides Claude through Neuropixels electrophysiology analysis: loading probe data, spike sorting, channel mapping, stimulus alignment, and QC for neuroscience experiments with reproducible, analysis-ready outputs.106installs99Opentrons IntegrationHelps Claude author and validate Opentrons liquid-handling protocols, configure deck layouts and pipettes, and integrate robot automation into reproducible laboratory workflows from natural-language instructions.106installs100Parallel WebEnables Claude to perform parallel web research for science: query multiple sources concurrently, collect papers and datasets, triangulate findings, and produce structured discovery briefs for early-stage investigation.106installs101PathmlClaude skill for PathML that structures computational pathology workflows—WSI loading, tiling strategies, stain normalization, dataset builders, and DL-ready histology preprocessing with reproducible configs.106installs102PylabrobotTeaches Claude to write, review, and troubleshoot PyLabRobot scripts that programmatically control lab robots, liquid handlers, and microplate workflows. Supports turning biological protocols into runnable automation for dispensers, transports, and orchestrated instrument sequences in scientific R&D environments.106installs103PymatgenPymatgen skill helps Claude use the materials-science toolkit for parsing CIF and POSCAR files, analyzing symmetry and phase stability, transforming structures, querying Materials Project data, and preparing inputs for DFT and property workflows.106installs104PyopenmsGuides Claude through pyOpenMS for mass spectrometry proteomics and metabolomics: loading mzML/mzXML, feature detection, retention-time alignment, identification, and quantification using OpenMS Python bindings with correct parameters and file handling.106installs105PysamTeaches Claude pysam patterns for genomic alignments: opening indexed BAM/CRAM, iterating reads and pileups, applying region filters, managing headers and references, and building performant SAM/BAM ETL steps in Python genomics pipelines.106installs106Simpysimpy skill helps Claude build discrete-event simulations: define SimPy environments, model processes as generators, allocate resources and queues, schedule timed events, and collect utilization metrics for operations research and system design studies.106installs107TiledbvcfInstructs Claude on TileDB-VCF for scalable genomic variant storage and querying. It addresses VCF ingestion, array tiling, filter predicates, and pipeline hooks so bioinformatics teams can integrate high-volume cohort data into reproducible analysis services and research databases.106installs108Treatment PlansHelps Claude compose structured clinical treatment plans with clear goals, interventions, timelines, and measurable outcomes. It emphasizes patient-specific context, care-team readability, and documentation standards suitable for EHR notes and supervised health workflows where accuracy and professional review are mandatory.106installs109Consciousness CouncilMulti-agent deliberation skill that convenes contrasting personas to explore consciousness, ethics, and complex AI research questions. Useful for discovering blind spots, synthesizing arguments, and producing nuanced recommendations before validation or build commitments.105installs110DepmapClaude skill from k-dense-ai/claude-scientific-skills for DepMap workflows: query dependency scores, transcriptomics, mutations, and pharmacological profiles across cancer cell lines to support target discovery, biomarker reasoning, and comparative oncology analysis without manual portal navigation.105installs111Dhdna ProfilerScientific skill for profiling dhdna datasets: load domain data, compute summary statistics and quality signals, and report findings so researchers can validate samples before deeper modeling or lab integration.105installs112Dnanexus IntegrationGuides Claude through DNAnexus cloud genomics integration: authenticating, creating projects, uploading and querying data objects, launching analysis apps, and monitoring jobs so bioinformatics pipelines run reliably on managed infrastructure.105installs113Latchbio IntegrationEnables LatchBio platform integration in Claude-assisted builds: authenticate, call APIs, map lab entities, and wire bioinformatics workflows so scientific apps can ingest, transform, and synchronize experimental data reliably.105installs114Omero IntegrationTeaches Claude to integrate with OMERO open microscopy environments: authenticate, query projects/datasets, retrieve images and metadata, and automate microscopy data access for lab pipelines.105installs115Open NotebookClaude skill for Open Notebook workflows to ingest documents, structure research notes, query sources with AI, and maintain traceable scientific discovery notebooks across a project.105installs116PennylaneTeaches agent-assisted PennyLane development for quantum machine learning: defining QNodes, selecting simulators or QPUs, composing hybrid models, optimizing variational circuits, and integrating results into broader scientific computing pipelines.105installs117PhylogeneticsCovers phylogenetics pipeline construction: curating sequences, running alignments, selecting evolutionary models, inferring trees, assessing support, and reporting comparative relationships so agents help researchers produce defensible evolutionary analyses.105installs118QiskitQiskit skill helps Claude build quantum computing workflows with Qiskit: designing circuits and gates, transpiling for target backends, running simulators or IBM Quantum jobs, implementing VQE and QAOA, and analyzing measurement counts and expectation values.105installs119ScveloInstructs Claude to run scVelo RNA velocity workflows: prepare spliced and unspliced layers, estimate velocities, build velocity graphs, fit dynamical models, and interpret differentiation trajectories atop scanpy AnnData or loom inputs in single-cell pipelines.105installs120What If OracleScientific what-if oracle for exploring alternate scenarios: pose conditional changes, reason over dependencies, surface sensitivities, and document implications so teams can validate hypotheses before locking experimental or product decisions.105installs121CirqScientific skill for building quantum computing workflows with Cirq: design circuits, run simulations, and integrate algorithm experiments into research-grade data pipelines via Claude agent tooling.104installs122Ginkgo Cloud Labginkgo-cloud-lab from k-dense-ai/claude-scientific-skills helps Claude Code integrate Ginkgo Bioworks Cloud Lab services for synthetic biology experiments, assay orchestration, and automated scientific data pipelines via platform APIs.104installs123GlycoengineeringSupports glycoengineering workflows for therapeutic and research proteins: choosing glycosylation sites, selecting expression systems, predicting glycoform outcomes, and linking wet-lab steps with analytics so agents help teams engineer glycans deliberately.104installs124Paper Lookuppaper-lookup is a Claude Code skill for ai & agent building. It helps solo builders move faster with AI-assisted development.98installs125Primekgprimekg is a Claude Code skill for ai & agent building. It helps solo builders move faster with AI-assisted development.95installs126Database LookupMulti-database lookup tool abstracts query logic for 78+ public scientific databases including NCBI, PubChem, and FRED. Route queries to appropriate databases and standardize response formats for cross-database research.93installs127Polars Biopolars-bio is a Claude Code skill for ai & agent building. It helps solo builders move faster with AI-assisted development.93installs128Optimize For Gpuoptimize-for-gpu is a Claude Code skill for ai & agent building. It helps solo builders move faster with AI-assisted development.90installs129Autoskillautoskill is a Claude Code skill for ai & agent building. It helps solo builders move faster with AI-assisted development.19installs130Exa Searchexa-search is a Claude Code skill for ai & agent building. It helps solo builders move faster with AI-assisted development.18installs131Bidsbids is a Claude Code skill for ai & agent building. It helps solo builders move faster with AI-assisted development.13installs132Pacsomaticpacsomatic is a Claude Code skill for ai & agent building. It helps solo builders move faster with AI-assisted development.12installs133Bulk Rnaseqbulk-rnaseq is a Claude Code skill for ai & agent building. It helps solo builders move faster with AI-assisted development.9installs134Liteparseliteparse is a Claude Code skill for ai & agent building. It helps solo builders move faster with AI-assisted development.9installs135Pathway Enrichmentpathway-enrichment is a Claude Code skill for ai & agent building. It helps you ship faster with AI-assisted development.8installs136Nextflownextflow is a Claude Code skill for ai & agent building. It helps you ship faster with AI-assisted development.7installs